Rh6DG515800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0032436
Physical Location & Seq
Reverse (-)
66771815 .. 66772045
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG515800.1

Sequence Viewer

Length: 231 bp
ATGGATGAGGAACATCAGGTTGCGGAAGCACAAGTACTGCTTCGTGAGGGGCCTGTGACAATTTGTTTTCATAGGACCGAAAATGTGGATCCAGCCATAGTTGCTCTCGAAATTCTCCAGATCAATGATAGAGCATATCATCTAATAGGATTCTCTAGTGGACGCATGGTTCTTAAAACAGTTAGCAGGAGAACCTTTGGGGATGGGAGGGTGGCAGCCGGCTTACTTTGA

Protein Analysis

76

Amino Acids

8.43

Weight (kDa)

5.83

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 7 - 68 5.1e-06 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0032436)

Species Orthologous Gene IDs
rosa_rugosa Rorug06G0396400
rosa_samantha Rh6DG515800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 83, 96
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 36
AloI GAACNNNNNNTCC 2 cut(s) 153, 185
AlwI GGATC 2 cut(s) 83, 96
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 50, 75
AvaII GGWCC 1 cut(s) 75
BamHI GGATCC 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 197
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 50, 75
BmiI GGNNCC 2 cut(s) 51, 90
BpmI CTGGAG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 218
BseGI GGATG 2 cut(s) 10, 208
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 219
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 88, 120
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 51, 90
BspPI GGATC 2 cut(s) 83, 96
BsrFI RCCGGY 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 218
BssMI GATC 2 cut(s) 88, 120
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 220
BstF5I GGATG 2 cut(s) 10, 208
BstKTI GATC 2 cut(s) 91, 123
BstMBI GATC 2 cut(s) 88, 120
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 10, 208
Cac8I GCNNGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 50, 75
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 52, 95, 218, 222
CviKI_1 RGCY 4 cut(s) 52, 95, 218, 222
CviQI GTAC 1 cut(s) 35
DpnI GATC 2 cut(s) 90, 122
DpnII GATC 2 cut(s) 88, 120
Eco47I GGWCC 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 50
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 72, 98, 136, 167
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 17, 215
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 44, 107, 118
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 169
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 88, 120
LpnPI CCDG 5 cut(s) 2, 66, 105, 131, 172
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 90, 122
MboI GATC 2 cut(s) 88, 120
MflI RGATCY 1 cut(s) 88
MluCI AATT 2 cut(s) 60, 111
MnlI CCTC 2 cut(s) 40, 201
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 101
NaeI GCCGGC 1 cut(s) 220
NdeII GATC 2 cut(s) 88, 120
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 51, 90
NmuCI GTSAC 1 cut(s) 55
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 51, 90
PspPI GGNCC 2 cut(s) 50, 75
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 88, 120
Sau96I GGNCC 2 cut(s) 50, 75
ScaI AGTACT 1 cut(s) 36
SetI ASST 2 cut(s) 21, 197
SinI GGWCC 1 cut(s) 75
Sse9I AATT 2 cut(s) 60, 111
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 92
TasI AATT 2 cut(s) 60, 111
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 1 cut(s) 111
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.