Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0030412

Physical Location & Seq

Genomic Coordinates Forward (+)

42470938 .. 42471838

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG338000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGACTCACAGAAGCGTTAACCCAGGCGAAATCCAATTGAGGATTGATCCAATCCATGCTGATGCTGATGAGGAGATCACCGGTCTTCGATCCCAAGTTAGAAGCTTGAGAAACTGCTGCCCAGCCCAAATAACAATGGAGAGTGTCGAAAGCAAAATATTTATATCAGATATACTGCATGTATATCAACAATGGAAACTTAGAGCATTGACTTCGTGGAGTCTTGCTTATTTACACAAGGCCATTGAACCAAAGGTGATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

6.96

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030412)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0264581
rosa_samantha	Rh7AG338000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	41, 84
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
AlwI	GGATC	2 cut(s)	41, 84
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	117
AsiGI	ACCGGT	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BciT130I	CCWGG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	121
BshFI	GGCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	81
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	46, 75, 89
BspANI	GGCC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	41, 84
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	46, 75, 89
Bst2UI	CCWGG	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	49, 78, 92
BstMBI	GATC	3 cut(s)	46, 75, 89
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	2 cut(s)	56, 179
CviJI	RGCY	3 cut(s)	105, 125, 242
CviKI_1	RGCY	3 cut(s)	105, 125, 242
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	3 cut(s)	48, 77, 91
DpnII	GATC	3 cut(s)	46, 75, 89
EcoRII	CCWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	59, 182
FaiI	YATR	5 cut(s)	57, 164, 173, 180, 184
FatI	CATG	2 cut(s)	55, 178
Fnu4HI	GCNGC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	2 cut(s)	59, 182
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	2 cut(s)	4, 220
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	59, 182
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	46, 75, 89
LpnPI	CCDG	4 cut(s)	9, 36, 94, 135
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	52
MalI	GATC	3 cut(s)	48, 77, 91
MboI	GATC	3 cut(s)	46, 75, 89
MboII	GAAGA	1 cut(s)	77
MfeI	CAATTG	1 cut(s)	35
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	33, 64
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	46, 75, 89
NlaIII	CATG	2 cut(s)	59, 182
NspI	RCATGY	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	3 cut(s)	46, 75, 89
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	2 cut(s)	107, 258
SfaNI	GCATC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	35
SspI	AATATT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	22
TaqI	TCGA	2 cut(s)	88, 147
TasI	AATT	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.