Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0026481

Physical Location & Seq

Genomic Coordinates Forward (+)

6367108 .. 6367916

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTATCAACAAGATTCAGAAACATGCATTGCATGAGCTAATGTACCCATCCCTTGGGTATGAATCAGACTTTAAAGTAAGAAAAATGATCAATGCAGTGGTGGAATTAGCGTTTCGGTGCCTGCAAAATGAGACTGACATGAGACCTTCTATGGTTGATGTGGAAAATGAACTAAAGAGGATACAGAGTGATGATTTTACAAAAGACAAGGCAGAGGAAATCGATATTTCAGTTGATGATGTTGTGCTATTAAAGAGTGGTCCTCTGCCACCTTCACCAGATTCTGTGACAATAAGTTGGGTTAGCAAGTCTTCAACACCAAATGATAGCACTGCGAAAGATTCAGATCTGTGTGAGTTCATCTATAACAGTAAACACTCAGAAGTCAGAACTCACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

134

Amino Acids

15.2

Weight (kDa)

5.02

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026481)

Species	Orthologous Gene IDs
rosa_samantha	Rh7BG086500 Rh7BG086800 Rh7CG077700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	318
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	128, 139
AlwNI	CAGNNNCTG	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	306
BccI	CCATC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	128, 139
BfuI	GTATCC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	250, 282
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	348
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	120
BshVI	ATCGAT	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	128, 139
Bso31I	GGTCTC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	90, 349
BspCNI	CTCAG	1 cut(s)	395
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	90, 349
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	93, 352
BstMAI	GTCTC	2 cut(s)	128, 139
BstMBI	GATC	2 cut(s)	90, 349
BstNSI	RCATGY	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	50
BtsI	GCAGTG	2 cut(s)	105, 333
BtsIMutI	CAGTG	2 cut(s)	105, 333
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	26, 35, 142
CviJI	RGCY	2 cut(s)	5, 40
CviKI_1	RGCY	2 cut(s)	5, 40
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	2 cut(s)	92, 351
DpnII	GATC	2 cut(s)	90, 349
DraI	TTTAAA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	29, 38, 145
FaiI	YATR	6 cut(s)	27, 36, 63, 143, 155, 369
FatI	CATG	3 cut(s)	25, 34, 141
FbaI	TGATCA	1 cut(s)	90
FokI	GGATG	1 cut(s)	37
Hin1II	CATG	3 cut(s)	29, 38, 145
HinfI	GANTC	4 cut(s)	16, 65, 284, 344
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	5 cut(s)	21, 70, 349, 385, 392
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	159, 285
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	29, 34, 98, 127
HpyF3I	CTNAG	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	29, 38, 145
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	90, 349
LpnPI	CCDG	2 cut(s)	137, 294
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	92, 351
MboI	GATC	2 cut(s)	90, 349
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	107, 400
MnlI	CCTC	3 cut(s)	174, 211, 276
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	2 cut(s)	75, 254
NdeII	GATC	2 cut(s)	90, 349
NlaIII	CATG	3 cut(s)	29, 38, 145
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	29
PfeI	GAWTC	4 cut(s)	16, 65, 284, 344
PflMI	CCANNNNNTGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	75, 254
Sau3AI	GATC	2 cut(s)	90, 349
Sau96I	GGNCC	1 cut(s)	263
SetI	ASST	3 cut(s)	42, 151, 277
SgeI	CNNG	9 cut(s)	25, 38, 47, 68, 136, 154, 223, 293, 322
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	107, 400
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	107, 400
TfiI	GAWTC	4 cut(s)	16, 65, 284, 344
Tru1I	TTAA	2 cut(s)	75, 254
Tru9I	TTAA	2 cut(s)	75, 254
TscAI	CASTG	2 cut(s)	105, 340
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	78, 186, 352
TspRI	CASTG	2 cut(s)	105, 340
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.