Rh7BG250400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0030665
Physical Location & Seq
Reverse (-)
22660456 .. 22676038
15583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG250400.1

Sequence Viewer

Length: 384 bp
ATGAGGAAAACTTTGGTTCCAGAAAGAATCACAGAAGCTGGAGGTGTTGTAATATCTGTGATCAACACCCTCAAAGAGTTGAAATTGTTTGAGACACGGACTGTGTCGAACAACACCTTGCTTGCTCTCACTCAGAACTGCCGCAGCTTGAAAATCCTTGACTTAAGGACGATAAACCCCAAAGTTCCACAAGCTGAAATCGATGCCAAAATCCTCGACATATTTGGGAGGTGTTTGATGGTTGAAGATGACGAGGTCAATGAGGACGCCGGCGGTAAGCAAGACTCAGTTAAGAAGGCTCATCCGAAGCAGAAGAGAGCTAGGCTAATGGTCGCTGGCAATGGCAAGGGCTGGGACTTGGTAGGGGTTGTTGATAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

9.39

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030665)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006271
rosa_samantha Rh7BG250400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 273
AcyI GRCGYC 1 cut(s) 267
AflII CTTAAG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 82, 151, 245
AluBI AGCT 4 cut(s) 38, 147, 194, 320
AluI AGCT 4 cut(s) 38, 147, 194, 320
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 232
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 142, 145
BlsI GCNGC 2 cut(s) 143, 146
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 267
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse118I RCCGGY 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 346
BseCI ATCGAT 1 cut(s) 201
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 146, 300
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 201
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 2 cut(s) 142, 273
BspCNI CTCAG 2 cut(s) 145, 299
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 18
BspTI CTTAAG 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 123, 271, 337
BstDEI CTNAG 2 cut(s) 132, 286
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 123, 271, 337
CaiI CAGNNNCTG 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 275
CviJI RGCY 7 cut(s) 38, 147, 194, 299, 320, 325, 351
CviKI_1 RGCY 7 cut(s) 38, 147, 194, 299, 320, 325, 351
DdeI CTNAG 2 cut(s) 132, 286
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
FaiI YATR 1 cut(s) 221
FaqI GGGAC 1 cut(s) 368
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 142, 145
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 142, 145
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 142, 145
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 60
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
HinfI GANTC 2 cut(s) 27, 284
HpaII CCGG 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 135, 306
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 132, 286
Hsp92I GRCGYC 1 cut(s) 267
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 5 cut(s) 24, 33, 283, 321, 337
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 257, 325
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 6 cut(s) 35, 80, 222, 224, 247, 256
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 2 cut(s) 164, 291
MspCI CTTAAG 1 cut(s) 163
MspI CCGG 1 cut(s) 270
NaeI GCCGGC 1 cut(s) 271
NdeII GATC 1 cut(s) 60
NgoMIV GCCGGC 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 27
PflFI GACNNNGTC 2 cut(s) 103, 254
PkrI GCNGC 2 cut(s) 143, 146
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 38
PsyI GACNNNGTC 2 cut(s) 103, 254
SaqAI TTAA 2 cut(s) 164, 291
SatI GCNGC 2 cut(s) 142, 145
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 278
SetI ASST 8 cut(s) 40, 46, 119, 149, 196, 233, 258, 322
SfaNI GCATC 1 cut(s) 193
SgrAI CRCCGGYG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 83
SsiI CCGC 2 cut(s) 142, 273
SspMI CTAG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 3 cut(s) 107, 201, 216
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 2 cut(s) 164, 291
Tru9I TTAA 2 cut(s) 164, 291
TseI GCWGC 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 112
Tth111I GACNNNGTC 2 cut(s) 103, 254
Vha464I CTTAAG 1 cut(s) 163
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.