Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0034594

Physical Location & Seq

Genomic Coordinates Reverse (-)

28620090 .. 28620488

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG301300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGCCGGAGTACATGGAAGACGGGGTGATTACTCCTAAACTGGATGTGTTTGCATTTGGGGTTGTGTTGTTGGAGCTATTGTCCGGAAGACCAGCCTCAGGTGATGAAGAATACACGTTGCTCTATTCATCCATTAGCGGGGTGCTTGAAGGAGATCATGTGGGGGACAAAATTAAAGGGTTTATGGATCCTTCTCTGAGGCGCCAGTATCCTTTGGAGCTGGCGTTTTCAATGGCTCAGCTCGCTAAGAGCTGCGTTGCGCCTCAGATCAACTCACGACCCACCATGGCTCAAGCTTCTGGTACTCTGTCTAAGATTCTTTCGTCCACTCTCGACTGGGATTCATCTAAAGCTGTGGATCTTGAACATTCAAGGTCACTGAGTCATGGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.33

Weight (kDa)

5.07

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 100	3.6e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 100	3.4e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034594)

Species	Orthologous Gene IDs
rosa_samantha	Rh7AG310200 Rh7BG301300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 204
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	185, 198, 369
AcyI	GRCGYC	2 cut(s)	5, 205
AfaI	GTAC	2 cut(s)	14, 307
AfiI	CCNNNNNNNGG	2 cut(s)	101, 141
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	152, 234, 368, 375
AluBI	AGCT	6 cut(s)	79, 223, 244, 255, 299, 356
AluI	AGCT	6 cut(s)	79, 223, 244, 255, 299, 356
AlwI	GGATC	3 cut(s)	185, 198, 369
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	7, 207, 265
AsuHPI	GGTGA	2 cut(s)	40, 116
AxyI	CCTNAGG	1 cut(s)	100
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	4, 204
BbsI	GAAGAC	2 cut(s)	27, 97
BbvI	GCAGC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	8, 208
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	6, 192, 206
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	27, 97
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	5, 205
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 98, 147, 177, 212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 141
Bse1I	ACTGG	3 cut(s)	48, 208, 344
Bse21I	CCTNAGG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	52, 131
BseLI	CCNNNNNNNGG	2 cut(s)	101, 141
BseMII	CTCAG	5 cut(s)	114, 191, 254, 281, 374
BseNI	ACTGG	3 cut(s)	48, 208, 344
BseXI	GCAGC	1 cut(s)	242
BshNI	GGYRCC	2 cut(s)	4, 204
BsiSI	CCGG	2 cut(s)	8, 87
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	101, 141
BsmFI	GGGAC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	157, 190, 270, 361
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	5 cut(s)	113, 192, 253, 280, 375
BspEI	TCCGGA	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	6, 192, 206
BspPI	GGATC	3 cut(s)	185, 198, 369
BspT107I	GGYRCC	2 cut(s)	4, 204
BsrI	ACTGG	3 cut(s)	48, 208, 344
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	4 cut(s)	157, 190, 270, 361
BssNI	GRCGYC	2 cut(s)	5, 205
BssT1I	CCWWGG	1 cut(s)	288
BstACI	GRCGYC	2 cut(s)	5, 205
BstC8I	GCNNGC	2 cut(s)	225, 246
BstDEI	CTNAG	7 cut(s)	100, 200, 240, 249, 267, 315, 383
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	52, 131
BstH2I	RGCGCY	2 cut(s)	8, 208
BstHHI	GCGC	3 cut(s)	7, 207, 265
BstKTI	GATC	4 cut(s)	160, 193, 273, 364
BstMBI	GATC	4 cut(s)	157, 190, 270, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	2 cut(s)	27, 97
BstX2I	RGATCY	2 cut(s)	190, 361
BstYI	RGATCY	2 cut(s)	190, 361
Bsu36I	CCTNAGG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	52, 131
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	225, 246
CfoI	GCGC	3 cut(s)	7, 207, 265
Csp6I	GTAC	2 cut(s)	13, 306
CviAII	CATG	4 cut(s)	16, 161, 289, 389
CviJI	RGCY	9 cut(s)	79, 98, 223, 239, 244, 255, 293, 299, 356
CviKI_1	RGCY	9 cut(s)	79, 98, 223, 239, 244, 255, 293, 299, 356
CviQI	GTAC	2 cut(s)	13, 306
DdeI	CTNAG	7 cut(s)	100, 200, 240, 249, 267, 315, 383
DinI	GGCGCC	2 cut(s)	6, 206
DpnI	GATC	4 cut(s)	159, 192, 272, 363
DpnII	GATC	4 cut(s)	157, 190, 270, 361
Eco130I	CCWWGG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	288
EgeI	GGCGCC	2 cut(s)	6, 206
EheI	GGCGCC	2 cut(s)	6, 206
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	4 cut(s)	19, 164, 292, 392
FaiI	YATR	5 cut(s)	17, 162, 188, 290, 390
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	15, 160, 288, 388
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	59, 118
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	3 cut(s)	6, 206, 264
GluI	GCNGC	1 cut(s)	256
HaeII	RGCGCY	2 cut(s)	8, 208
HapII	CCGG	2 cut(s)	8, 87
HhaI	GCGC	3 cut(s)	7, 207, 265
Hin1I	GRCGYC	2 cut(s)	5, 205
Hin1II	CATG	4 cut(s)	19, 164, 292, 392
Hin6I	GCGC	3 cut(s)	5, 205, 263
HinP1I	GCGC	3 cut(s)	5, 205, 263
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	3 cut(s)	319, 344, 385
HpaII	CCGG	2 cut(s)	8, 87
HphI	GGTGA	2 cut(s)	40, 116
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	201, 270
Hpy188III	TCNNGA	4 cut(s)	87, 279, 335, 365
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	2 cut(s)	146, 204
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	7 cut(s)	100, 200, 240, 249, 267, 315, 383
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	2 cut(s)	5, 205
Hsp92II	CATG	4 cut(s)	19, 164, 292, 392
HspAI	GCGC	3 cut(s)	5, 205, 263
KasI	GGCGCC	2 cut(s)	4, 204
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	157, 190, 270, 361
LmnI	GCTCC	2 cut(s)	76, 220
LpnPI	CCDG	9 cut(s)	21, 29, 87, 100, 108, 209, 221, 288, 325
Lsp1109I	GCAGC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	4 cut(s)	159, 192, 272, 363
MboI	GATC	4 cut(s)	157, 190, 270, 361
MboII	GAAGA	3 cut(s)	32, 102, 122
MflI	RGATCY	2 cut(s)	190, 361
MluCI	AATT	1 cut(s)	174
Mly113I	GGCGCC	2 cut(s)	5, 205
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	109, 195, 276
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	1 cut(s)	177
MspI	CCGG	2 cut(s)	8, 87
MwoI	GCNNNNNNNGC	1 cut(s)	245
NarI	GGCGCC	2 cut(s)	5, 205
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	157, 190, 270, 361
NlaIII	CATG	4 cut(s)	19, 164, 292, 392
NlaIV	GGNNCC	3 cut(s)	6, 192, 206
NmuCI	GTSAC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	319, 344
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	393
PluTI	GGCGCC	2 cut(s)	8, 208
PpsI	GAGTC	1 cut(s)	393
PspN4I	GGNNCC	3 cut(s)	6, 192, 206
PsuI	RGATCY	2 cut(s)	190, 361
RsaI	GTAC	2 cut(s)	14, 307
RsaNI	GTAC	2 cut(s)	13, 306
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	4 cut(s)	157, 190, 270, 361
SchI	GAGTC	1 cut(s)	394
SetI	ASST	9 cut(s)	81, 106, 122, 225, 246, 257, 301, 358, 380
SfoI	GGCGCC	2 cut(s)	6, 206
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	141
SspDI	GGCGCC	2 cut(s)	4, 204
StyI	CCWWGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	319, 344
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	3 cut(s)	120, 123, 336
TspRI	CASTG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.