Rh7CG006200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0033168
Physical Location & Seq
Forward (+)
476893 .. 477261
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG006200.1

Sequence Viewer

Length: 369 bp
ATGCAGGATTCTTTTGCATTGTGTCGCGTGTTCAAGAAAAATGGAATATGCGCGGAGATTGAAGAGCAAGGAGGGCAAAGTAGCAGTAGTGATGTATCGCTATTAATTCATGAAAGATCATCACAATTATTAGCAGCAGGAGGTCTACACCACAACGATCACTGTAGTATTGAAACCATGTCACCAGAAAATATTCCGAGGGCGTCGTCGTCGTCATGTCTGCAGGACTTGGAGGAAGAAGATAAGGACGACTCGTGGATGCAGTTTATCACAGATGATCCATGGTCTTCGTCTAACACCCCAATTAATGGTACTACTGCTGAAGTCGACCTCTCTCAGTCTCATGCGGGTGTGGCCTTCACAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

122

Amino Acids

13.25

Weight (kDa)

4.34

Isoelectric Point (pI)

79.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033168)

Species Orthologous Gene IDs
rosa_samantha Rh7CG006200 Rh7DG005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 308
AccI GTMKAC 2 cut(s) 145, 327
AccII CGCG 2 cut(s) 27, 53
AciI CCGC 2 cut(s) 53, 347
AclWI GGATC 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 3 cut(s) 34, 62, 173
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 134
AseI ATTAAT 2 cut(s) 104, 306
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 174
BauI CACGAG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 345
BfmI CTRYAG 2 cut(s) 163, 221
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 197, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 197, 281
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 27, 53
BshFI GGCC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 345
BsnI GGCC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 116, 157, 277
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 2 cut(s) 53, 347
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 2 cut(s) 27, 53
BspHI TCATGA 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 225
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 197, 281
BssMI GATC 3 cut(s) 116, 157, 277
BssNI GRCGYC 1 cut(s) 203
BssSI CACGAG 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 2 cut(s) 27, 53
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 119, 160, 280
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 3 cut(s) 116, 157, 277
BstMWI GCNNNNNNNGC 2 cut(s) 73, 353
BstSFI CTRYAG 2 cut(s) 163, 221
BstUI CGCG 2 cut(s) 27, 53
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 53
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 312
CviAII CATG 5 cut(s) 110, 178, 216, 282, 344
CviJI RGCY 1 cut(s) 356
CviKI_1 RGCY 1 cut(s) 356
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 118, 159, 279
DpnII GATC 3 cut(s) 116, 157, 277
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 5 cut(s) 113, 181, 219, 285, 347
FaiI YATR 6 cut(s) 49, 111, 179, 217, 283, 345
FatI CATG 5 cut(s) 109, 177, 215, 281, 343
FauI CCCGC 1 cut(s) 340
FblI GTMKAC 2 cut(s) 145, 327
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 356
HgaI GACGC 1 cut(s) 192
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 5 cut(s) 113, 181, 219, 285, 347
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 2 cut(s) 8, 251
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 146, 328
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 2 cut(s) 34, 110
Hpy8I GTNNAC 2 cut(s) 146, 328
Hpy99I CGWCG 3 cut(s) 208, 211, 214
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 4, 17, 223, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 353
HpyF3I CTNAG 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 5 cut(s) 113, 181, 219, 285, 347
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 116, 157, 277
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 123, 198, 209
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 180
MalI GATC 3 cut(s) 118, 159, 279
MboI GATC 3 cut(s) 116, 157, 277
MboII GAAGA 4 cut(s) 74, 248, 251, 279
MluCI AATT 3 cut(s) 105, 125, 303
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 5 cut(s) 65, 134, 192, 226, 341
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 2 cut(s) 104, 306
MslI CAYNNNNRTG 1 cut(s) 348
MvnI CGCG 2 cut(s) 27, 53
MwoI GCNNNNNNNGC 2 cut(s) 73, 353
NcoI CCATGG 1 cut(s) 281
NdeII GATC 3 cut(s) 116, 157, 277
NlaIII CATG 5 cut(s) 113, 181, 219, 285, 347
NmuCI GTSAC 1 cut(s) 180
PagI TCATGA 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PshBI ATTAAT 2 cut(s) 104, 306
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 348
SalI GTCGAC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 104, 306
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 116, 157, 277
SchI GAGTC 1 cut(s) 245
SetI ASST 3 cut(s) 145, 333, 368
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 2 cut(s) 163, 221
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 3 cut(s) 105, 125, 303
SsiI CCGC 2 cut(s) 53, 347
SspI AATATT 1 cut(s) 193
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 327
TasI AATT 3 cut(s) 105, 125, 303
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 104, 306
Tru9I TTAA 2 cut(s) 104, 306
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 98, 126
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 308
VspI ATTAAT 2 cut(s) 104, 306
XmiI GTMKAC 2 cut(s) 145, 327
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.