Rh7CG124500

callose synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
9653603 .. 9654748
1146 bp
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UTR
Exon/CDS
Intron
Rh7CG124500.1

Sequence Viewer

Length: 336 bp
ATGAGGAGGGGATTCAGCTTTTTTGCTGAAGCCTTAAAAGAGGAAAAGGGTAGTTTGGATGTGTTGGTCATGTTTGGGGCTTATACCACAGCTAGAGGCATGGCTATCTCAAGACTTGTAATTAGATTTTTCTGGTTTGGCTTCAGCTCTGTTGCTGTGACATATATTTATCTGAAAGTTCTGCACGAAAGAAATGATTACTCAAATGATCATTCTATTTTCGGATATACAGTTTATGCAGCTTTACGCCTAGTCCTTGCGCTATTACTCAAATTTGCGGCATGTAGATTGAGGGCAAATCACCTCATGACCAAATCATTTACTATACCATGTTAA

Protein Analysis

111

Amino Acids

12.73

Weight (kDa)

9.79

Isoelectric Point (pI)

21.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030533)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0191651
rosa_samantha Rh7CG124500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 2 cut(s) 48, 127
AluBI AGCT 4 cut(s) 18, 92, 147, 242
AluI AGCT 4 cut(s) 18, 92, 147, 242
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 293
BbvI GCAGC 1 cut(s) 251
BclI TGATCA 1 cut(s) 208
BfaI CTAG 2 cut(s) 93, 251
BisI GCNGC 2 cut(s) 240, 279
BlsI GCNGC 2 cut(s) 241, 280
BpuEI CTTGAG 1 cut(s) 94
BseGI GGATG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 167
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 1 cut(s) 278
BspHI TCATGA 1 cut(s) 306
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 232
BstF5I GGATG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 64
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 262
CviAII CATG 5 cut(s) 70, 100, 282, 307, 330
CviJI RGCY 8 cut(s) 18, 32, 80, 92, 104, 141, 147, 242
CviKI_1 RGCY 8 cut(s) 18, 32, 80, 92, 104, 141, 147, 242
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 48, 127
FaeI CATG 5 cut(s) 73, 103, 285, 310, 333
FatI CATG 5 cut(s) 69, 99, 281, 306, 329
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 240, 279
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 240, 279
FspBI CTAG 2 cut(s) 93, 251
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 240, 279
HhaI GCGC 1 cut(s) 262
Hin1II CATG 5 cut(s) 73, 103, 285, 310, 333
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 12
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 174, 224
Hpy188III TCNNGA 2 cut(s) 111, 307
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 184, 239
Hsp92II CATG 5 cut(s) 73, 103, 285, 310, 333
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 2 cut(s) 93, 251
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MluCI AATT 2 cut(s) 120, 272
MnlI CCTC 4 cut(s) 34, 89, 285, 314
MseI TTAA 2 cut(s) 35, 334
NdeII GATC 1 cut(s) 208
NlaIII CATG 5 cut(s) 73, 103, 285, 310, 333
NmuCI GTSAC 1 cut(s) 157
NspI RCATGY 1 cut(s) 285
PagI TCATGA 1 cut(s) 306
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 241, 280
SaqAI TTAA 2 cut(s) 35, 334
SatI GCNGC 2 cut(s) 240, 279
Sau3AI GATC 1 cut(s) 208
SetI ASST 5 cut(s) 20, 94, 149, 244, 306
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 2 cut(s) 120, 272
SsiI CCGC 1 cut(s) 278
SspMI CTAG 2 cut(s) 93, 251
TaaI ACNGT 1 cut(s) 232
TasI AATT 2 cut(s) 120, 272
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 35, 334
Tru9I TTAA 2 cut(s) 35, 334
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 157
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 285
XspI CTAG 2 cut(s) 93, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.