Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019446

Physical Location & Seq

Genomic Coordinates Reverse (-)

22415827 .. 22417927

Gene Structure 2101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGAGAAGAAATTTGACAGACTTAGCAACTTACCTTTTGATGTTCTAGAACAAATTTTGTCATGTTTGCCCATTAAGGATGCAGTGAAAACGAGTGTTTTATCAAGCAACTGGAGGTACAAAGCGGCTACGCTTCCAAATCTTGTGTTTGATGATCATTGTATCTCTGGTGAATTCTTATCTGTTAATTCATCGAAAATGGATAGTTACAATAATTACAATTCTCTTATGCTTCCGTATCATCGTTTGTGTGATAAACAGTACTACTCTGCCTGGTGCCCAAACCATGCAGCCATTGTCAATATTGTTGATCATGTACTTTCTTCTCACATTGGTCCCATACACAAGTTCAGGATTTCCCATCCCCATCTTCAAGCCAGCCACGATATTGATAGATGGATTCTTCATCTATCAACAAAGTCTATCAGGGAGTTCAGTCTTGAAATCTTGACTTGGCGCCCCTACCGTATCCCTTCATGTCTGCTTTCGTGTCAAGATATTGTTCATCTAGAGTTGTATCATTGTTTGCTAAAACTACCAAGCAAATTCAAAGGTTTTGAGAATTTGAAGAGCATGGACATTCAGCGTGTTCGCCTCTCCCGCCGTGTTCTTGAAAAGCTAATTATTCGTTGTCCACTGCTTGAGAGATTGACACTGGCAAACTGTGATGGTTTCAGCCATTTCAAGATTAATGCACCGAATCTCCGGATACTTGACCTTGAAGGTAAATTTGAGGATTTCATTCTTGAAGATACCTCAAATCTGGCTGAGGTTTGCATTGATTTGGACTTCAAGGCTAACCAAAAACAGATTCTCGACTGTAATTCTAGCAATTTGCTCAAATTTTTTGCTGACTTGCCTAATATTAGAAAGCTCAGAGTTCAGAATCAGTTTATAAAGTATCTGGCTGTTGGTCCTTTGGCAGACAAGTTGCCTGAACCATGTCGGTATCTTGAATTTCTTTCTGTATGCGTAAGCTTCAGTGATTTGGATGAGATTCTAACTCTTCTAGGCCTTTTGAGAAGCTCCCCTGCACTAAAAGAACTAGAAATTTTGGTCTGCAAAGAAGATAACGCTGGTGGGGGAGAAATGTATTCTGGGCTACATGACAATGTGAGTTGTCAATTCACCCAACTGCAACTTGTTCAAATAACAGGCGTCTCTGTCAAAGCTGAATTAGATTTCATCAAATTTCTGCTTCTAAGTTCACCTGTGCTTAAGACGATGACTGTTACGCCTACTTCTGTGAATGATTTTCTGGAACTAGTTGGAGAGTTGCTCGGGTTTAGGTGTGCCTCAGCGAGTGCCAATATAATCTACTTAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

443

Amino Acids

50.5

Weight (kDa)

6.4

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 44	2.3e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	117 - 411	5.9e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	130 - 351	1.2e-20	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205971
rosa_laevigata	RLG00000003342
rosa_multiflora	Rmu_sc0000076.1_g000026 Rmu_sc0004084.1_g000015
rosa_roxburghii	Rroxscaffold_3G00251840
rosa_rugosa	Rorug07G0094100
rosa_samantha	Rh7CG240200
rosa_wichuraiana	Rw0G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	896
AccB1I	GGYRCC	2 cut(s)	276, 456
AccIII	TCCGGA	1 cut(s)	705
AciI	CCGC	2 cut(s)	125, 601
AcuI	CTGAAG	1 cut(s)	964
AcyI	GRCGYC	2 cut(s)	457, 1158
AfaI	GTAC	3 cut(s)	119, 263, 318
AflII	CTTAAG	1 cut(s)	1217
AhlI	ACTAGT	1 cut(s)	1264
AjnI	CCWGG	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	795, 827
AluBI	AGCT	5 cut(s)	619, 874, 978, 1026, 1172
AluI	AGCT	5 cut(s)	619, 874, 978, 1026, 1172
Alw26I	GTCTC	1 cut(s)	1165
Ama87I	CYCGRG	1 cut(s)	1280
Aor13HI	TCCGGA	1 cut(s)	705
AoxI	GGCC	1 cut(s)	1012
ApeKI	GCWGC	1 cut(s)	290
AseI	ATTAAT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	335, 914
AsuHPI	GGTGA	3 cut(s)	182, 1120, 1200
AvaI	CYCGRG	1 cut(s)	1280
AvaII	GGWCC	2 cut(s)	335, 914
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	276, 456
BbvCI	CCTCAGC	2 cut(s)	768, 1297
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	4 cut(s)	369, 375, 390, 662
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	1 cut(s)	274
BciVI	GTATCC	2 cut(s)	479, 702
BclI	TGATCA	2 cut(s)	154, 310
BcoDI	GTCTC	1 cut(s)	1165
BcuI	ACTAGT	1 cut(s)	1264
BfaI	CTAG	6 cut(s)	47, 509, 828, 1010, 1046, 1265
BfoI	RGCGCY	1 cut(s)	460
BfrI	CTTAAG	1 cut(s)	1217
BfuI	GTATCC	2 cut(s)	479, 702
BisI	GCNGC	2 cut(s)	126, 291
BlsI	GCNGC	2 cut(s)	127, 292
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	335, 914
BmeT110I	CYCGRG	1 cut(s)	1280
BmgT120I	GGNCC	2 cut(s)	335, 914
BmiI	GGNNCC	3 cut(s)	278, 337, 458
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	1263, 1295
BpmI	CTGGAG	1 cut(s)	133
Bpu10I	CCTNAGC	2 cut(s)	768, 1297
BpuEI	CTTGAG	1 cut(s)	662
BsaHI	GRCGYC	2 cut(s)	457, 1158
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bse1I	ACTGG	2 cut(s)	116, 660
BseAI	TCCGGA	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	274
BseGI	GGATG	3 cut(s)	85, 361, 997
BseMII	CTCAG	3 cut(s)	759, 889, 1311
BseNI	ACTGG	2 cut(s)	116, 660
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	1017
BshFI	GGCC	1 cut(s)	1014
BshNI	GGYRCC	2 cut(s)	276, 456
BsiHKCI	CYCGRG	1 cut(s)	1280
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	1165
BsmBI	CGTCTC	1 cut(s)	1165
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	1014
BsoBI	CYCGRG	1 cut(s)	1280
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	154, 310
BspACI	CCGC	2 cut(s)	125, 601
BspANI	GGCC	1 cut(s)	1014
BspCNI	CTCAG	3 cut(s)	760, 888, 1310
BspEI	TCCGGA	1 cut(s)	705
BspLI	GGNNCC	3 cut(s)	278, 337, 458
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	2 cut(s)	276, 456
BspTI	CTTAAG	1 cut(s)	1217
BsrI	ACTGG	2 cut(s)	116, 660
BssMI	GATC	2 cut(s)	154, 310
BssNI	GRCGYC	2 cut(s)	457, 1158
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	5 cut(s)	261, 467, 665, 821, 1231
Bst6I	CTCTTC	2 cut(s)	563, 1011
BstACI	GRCGYC	2 cut(s)	457, 1158
BstAFI	CTTAAG	1 cut(s)	1217
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	6 cut(s)	23, 768, 875, 1202, 1297, 1321
BstF5I	GGATG	3 cut(s)	85, 361, 997
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	157, 313
BstMAI	GTCTC	1 cut(s)	1165
BstMBI	GATC	2 cut(s)	154, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	302
BsuI	GTATCC	2 cut(s)	479, 702
BsuRI	GGCC	1 cut(s)	1014
BtsCI	GGATG	3 cut(s)	85, 361, 997
BtsI	GCAGTG	2 cut(s)	90, 635
BtsIMutI	CAGTG	4 cut(s)	90, 635, 653, 988
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	335, 914
CseI	GACGC	1 cut(s)	1147
Csp6I	GTAC	3 cut(s)	118, 262, 317
CviAII	CATG	8 cut(s)	63, 287, 314, 477, 574, 942, 1106, 1329
CviQI	GTAC	3 cut(s)	118, 262, 317
DdeI	CTNAG	6 cut(s)	23, 768, 875, 1202, 1297, 1321
DinI	GGCGCC	1 cut(s)	458
DpnI	GATC	2 cut(s)	156, 312
DpnII	GATC	2 cut(s)	154, 310
Eam1104I	CTCTTC	2 cut(s)	563, 1011
EarI	CTCTTC	2 cut(s)	563, 1011
Eco147I	AGGCCT	1 cut(s)	1014
Eco47I	GGWCC	2 cut(s)	335, 914
Eco57I	CTGAAG	1 cut(s)	964
Eco88I	CYCGRG	1 cut(s)	1280
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	458
EheI	GGCGCC	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	1165
FaeI	CATG	8 cut(s)	66, 290, 317, 480, 577, 945, 1109, 1332
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	8 cut(s)	62, 286, 313, 476, 573, 941, 1105, 1328
FauI	CCCGC	1 cut(s)	608
FbaI	TGATCA	2 cut(s)	154, 310
Fnu4HI	GCNGC	2 cut(s)	126, 291
FokI	GGATG	3 cut(s)	92, 348, 1004
Fsp4HI	GCNGC	2 cut(s)	126, 291
FspBI	CTAG	6 cut(s)	47, 509, 828, 1010, 1046, 1265
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	2 cut(s)	126, 291
GsuI	CTGGAG	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	1014
HapII	CCGG	1 cut(s)	706
HgaI	GACGC	1 cut(s)	1147
HhaI	GCGC	1 cut(s)	459
Hin1I	GRCGYC	2 cut(s)	457, 1158
Hin1II	CATG	8 cut(s)	66, 290, 317, 480, 577, 945, 1109, 1332
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	976
HinfI	GANTC	5 cut(s)	400, 700, 811, 886, 997
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	3 cut(s)	182, 1120, 1200
Hpy166II	GTNNAC	2 cut(s)	635, 1208
Hpy188I	TCNGA	2 cut(s)	878, 885
Hpy8I	GTNNAC	2 cut(s)	635, 1208
HpyAV	CCTTC	2 cut(s)	483, 716
HpyCH4III	ACNGT	5 cut(s)	261, 467, 665, 821, 1231
HpyCH4V	TGCA	7 cut(s)	83, 290, 695, 777, 1034, 1062, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	6 cut(s)	23, 768, 875, 1202, 1297, 1321
Hsp92I	GRCGYC	2 cut(s)	457, 1158
Hsp92II	CATG	8 cut(s)	66, 290, 317, 480, 577, 945, 1109, 1332
HspAI	GCGC	1 cut(s)	457
KasI	GGCGCC	1 cut(s)	456
Kpn2I	TCCGGA	1 cut(s)	705
Ksp22I	TGATCA	2 cut(s)	154, 310
Kzo9I	GATC	2 cut(s)	154, 310
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	1031
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	6 cut(s)	47, 509, 828, 1010, 1046, 1265
MaeIII	GTNAC	2 cut(s)	206, 1231
MalI	GATC	2 cut(s)	156, 312
MboI	GATC	2 cut(s)	154, 310
MboII	GAAGA	8 cut(s)	19, 315, 362, 395, 580, 761, 998, 1079
MhlI	GDGCHC	1 cut(s)	281
Mly113I	GGCGCC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	1249
MnlI	CCTC	6 cut(s)	108, 605, 727, 763, 766, 1306
MroI	TCCGGA	1 cut(s)	705
MseI	TTAA	4 cut(s)	75, 186, 690, 1218
MslI	CAYNNNNRTG	1 cut(s)	1110
MspCI	CTTAAG	1 cut(s)	1217
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	600
NarI	GGCGCC	1 cut(s)	457
NdeII	GATC	2 cut(s)	154, 310
NlaIII	CATG	8 cut(s)	66, 290, 317, 480, 577, 945, 1109, 1332
NlaIV	GGNNCC	3 cut(s)	278, 337, 458
PceI	AGGCCT	1 cut(s)	1014
PciSI	GCTCTTC	1 cut(s)	563
PfeI	GAWTC	5 cut(s)	400, 700, 811, 886, 997
PkrI	GCNGC	2 cut(s)	127, 292
PluTI	GGCGCC	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	690
PsiI	TTATAA	1 cut(s)	896
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	278, 337, 458
PspPI	GGNCC	2 cut(s)	335, 914
RsaI	GTAC	3 cut(s)	119, 263, 318
RsaNI	GTAC	3 cut(s)	118, 262, 317
RseI	CAYNNNNRTG	1 cut(s)	1110
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	4 cut(s)	75, 186, 690, 1218
SatI	GCNGC	2 cut(s)	126, 291
Sau3AI	GATC	2 cut(s)	154, 310
Sau96I	GGNCC	2 cut(s)	335, 914
ScaI	AGTACT	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	70
SfoI	GGCGCC	1 cut(s)	458
SinI	GGWCC	2 cut(s)	335, 914
SmiMI	CAYNNNNRTG	1 cut(s)	1110
SmlI	CTYRAG	2 cut(s)	641, 1217
SmoI	CTYRAG	2 cut(s)	641, 1217
SpeI	ACTAGT	1 cut(s)	1264
SseBI	AGGCCT	1 cut(s)	1014
SsiI	CCGC	2 cut(s)	125, 601
SspDI	GGCGCC	1 cut(s)	456
SspI	AATATT	2 cut(s)	304, 865
SspMI	CTAG	6 cut(s)	47, 509, 828, 1010, 1046, 1265
StuI	AGGCCT	1 cut(s)	1014
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	5 cut(s)	261, 467, 665, 821, 1231
TaqI	TCGA	2 cut(s)	194, 816
TatI	WGTACW	2 cut(s)	261, 316
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	5 cut(s)	400, 700, 811, 886, 997
Tru1I	TTAA	4 cut(s)	75, 186, 690, 1218
Tru9I	TTAA	4 cut(s)	75, 186, 690, 1218
TscAI	CASTG	4 cut(s)	90, 642, 660, 988
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	6 cut(s)	180, 395, 465, 494, 730, 1174
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	4 cut(s)	90, 642, 660, 988
Vha464I	CTTAAG	1 cut(s)	1217
VpaK11BI	GGWCC	2 cut(s)	335, 914
VspI	ATTAAT	1 cut(s)	690
XbaI	TCTAGA	2 cut(s)	46, 508
XspI	CTAG	6 cut(s)	47, 509, 828, 1010, 1046, 1265
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.