Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0025148

Physical Location & Seq

Genomic Coordinates Forward (+)

31905985 .. 31906392

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGACATGTTTATCGCGTCCTCTATACTCTTTACAAAATAATAACTTGGTTGTTTTCCCGAGGGTTTTTCGTTACGAGGACCAAAGATGTTATGGCTTCCCCCGTTGAGATTAAGGAAAAAGGAAGCTCTGCTTCTATACAGGAACTGAGTGTTATGGATGTTCCCCTCCCCAAGCTTCACATTCTCACACCATCTACCGATACTTCTACTCTTGCAGCTACTGCAGATGCTGCAGATGCAGCAGATGCAGACATTCACTTCCTCTCTGTCAGTTCTCTCCTGGATAAGGTGCTTTTGAGCTCTACAATTCTACATCACTTAAATTTTATATGCCTCATGTTCCATTATGGTAAAGATCCTGATTCCTTAGGTATAGTTGAACTTTGTTTTTACTGCCTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05169 map03013 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.11

Weight (kDa)

6.27

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025148)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0214951
rosa_samantha	Rh7AG285800 Rh7CG304800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	129, 178, 221, 303
AluI	AGCT	4 cut(s)	129, 178, 221, 303
Alw21I	GWGCWC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	3 cut(s)	148, 224, 233
Ama87I	CYCGRG	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	218, 233, 242
ApoI	RAATTY	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	81
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	220, 230, 254
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	225, 234
BisI	GCNGC	3 cut(s)	219, 234, 243
BlsI	GCNGC	3 cut(s)	220, 235, 244
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	3 cut(s)	220, 229, 238
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse21I	CCTNAGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	220, 230, 254
Bsh1236I	CGCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	18
BspMAI	CTGCAG	2 cut(s)	229, 238
BspPI	GGATC	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	284
BstAPI	GCANNNNNTGC	3 cut(s)	224, 233, 248
BstDEI	CTNAG	2 cut(s)	149, 370
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 233, 239, 242, 248
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	2 cut(s)	225, 234
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	220, 230, 254
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	166
CaiI	CAGNNNCTG	3 cut(s)	148, 224, 233
Cfr13I	GGNCC	1 cut(s)	81
CseI	GACGC	1 cut(s)	7
CviAII	CATG	2 cut(s)	8, 340
CviJI	RGCY	5 cut(s)	98, 129, 178, 221, 303
CviKI_1	RGCY	5 cut(s)	98, 129, 178, 221, 303
DdeI	CTNAG	2 cut(s)	149, 370
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	303
Eco81I	CCTNAGG	1 cut(s)	370
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	2 cut(s)	11, 343
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	2 cut(s)	7, 339
Fnu4HI	GCNGC	3 cut(s)	219, 234, 243
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	219, 234, 243
GluI	GCNGC	3 cut(s)	219, 234, 243
HgaI	GACGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	11, 343
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	60, 362
HpyCH4V	TGCA	5 cut(s)	218, 227, 236, 242, 251
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 233, 239, 242, 248
HpyF3I	CTNAG	2 cut(s)	149, 370
Hsp92II	CATG	2 cut(s)	11, 343
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	128, 269, 296, 375
Lsp1109I	GCAGC	3 cut(s)	220, 230, 254
LweI	GCATC	3 cut(s)	220, 229, 238
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	309, 325
MnlI	CCTC	6 cut(s)	32, 56, 72, 179, 275, 347
MseI	TTAA	2 cut(s)	114, 323
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	5 cut(s)	224, 233, 239, 242, 248
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	11, 343
NspI	RCATGY	1 cut(s)	11
PciI	ACATGT	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	220, 235, 244
PscI	ACATGT	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	81
PstI	CTGCAG	2 cut(s)	229, 238
PstNI	CAGNNNCTG	3 cut(s)	148, 224, 233
PsuI	RGATCY	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	114, 323
SatI	GCNGC	3 cut(s)	219, 234, 243
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	6 cut(s)	131, 180, 223, 294, 305, 376
SfaNI	GCATC	3 cut(s)	220, 229, 238
SfcI	CTRYAG	2 cut(s)	225, 234
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	2 cut(s)	309, 325
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	282
TaqI	TCGA	1 cut(s)	403
TasI	AATT	2 cut(s)	309, 325
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	114, 323
Tru9I	TTAA	2 cut(s)	114, 323
TseI	GCWGC	3 cut(s)	218, 233, 242
VpaK11BI	GGWCC	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.