Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0026316

Physical Location & Seq

Genomic Coordinates Reverse (-)

32901110 .. 32903623

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGTTGCTTTGGGTGCTTCAGTCCTCGCCGGAAAGATGTTAGCAAGGTCGAAATTGATAATGGTACTAATCGATCCTCAGGTAGTGGAAGAGGAAGGGGACACTTTGATGATACTGAGAGTGGGAAGGGAAAAGGAAAGGGTGGCAACAGCGCACAAAAGAGTGTGGCACGAAGCTTCACATTTCGCGAACTTGCAGCCGCCACTAAGGGATTTAAGGAAGTGAATTTGATTGGGGAAGGGGGCTTCGGAAGAGTTTACAAAGGTCGGCTTGAAGCAGGCCAGTCTCGTCCATTCTTGAAAGACCGAAGGAAGTTTGTCCAGTTAGTTGATCCTTTATTGCAGGGACGCTTTCCCATTCGTTGTTTGCATCATGCAGTTGCTATTACTGCCATGTGTCTTCAAGAGCAACCAACTTTCCGTCCTCTTATCAGTGATATTGTTGTAGCACTCGAGTACTTGGCTTCACAGAACCACAAACCGGGCAGAGCTGGGGTTCATAGTCCCATTTCTTCATCACCGTCACAGCAGCACAGGGATACTTTTTCTCGGGAATCAGATTACAGAATGAGTTCAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

21.36

Weight (kDa)

10.07

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026316)

Species	Orthologous Gene IDs
rosa_samantha	Rh7AG290900 Rh7CG310800 Rh7DG294500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	69, 326
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	2 cut(s)	67, 458
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	275, 301, 404, 576
AluBI	AGCT	2 cut(s)	177, 491
AluI	AGCT	2 cut(s)	177, 491
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	69, 326
Ama87I	CYCGRG	2 cut(s)	452, 549
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	197, 529
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	510
AvaI	CYCGRG	2 cut(s)	452, 549
AxyI	CCTNAGG	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	209, 541
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	198, 201, 530
BlsI	GCNGC	3 cut(s)	199, 202, 531
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	483
BmeT110I	CYCGRG	2 cut(s)	452, 549
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	483
Bsa29I	ATCGAT	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	283, 322
Bse21I	CCTNAGG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	93, 108
BseNI	ACTGG	2 cut(s)	283, 322
BseXI	GCAGC	2 cut(s)	209, 541
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	452, 549
BsiSI	CCGG	2 cut(s)	31, 482
BslFI	GGGAC	3 cut(s)	114, 360, 489
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	114, 360, 489
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	2 cut(s)	452, 549
Bsp143I	GATC	2 cut(s)	74, 331
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	92, 109
BspDI	ATCGAT	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	189
BspPI	GGATC	2 cut(s)	69, 326
BsrI	ACTGG	2 cut(s)	283, 322
BssMI	GATC	2 cut(s)	74, 331
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	2 cut(s)	85, 247
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	79, 117, 207
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	77, 334
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	2 cut(s)	74, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 389
BstSCI	CCNGG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	209, 541
BstV2I	GAAGAC	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	439
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	73
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	66, 457
CviAII	CATG	2 cut(s)	374, 394
CviJI	RGCY	7 cut(s)	177, 200, 246, 271, 282, 464, 491
CviKI_1	RGCY	7 cut(s)	177, 200, 246, 271, 282, 464, 491
CviQI	GTAC	2 cut(s)	66, 457
DdeI	CTNAG	3 cut(s)	79, 117, 207
DpnI	GATC	2 cut(s)	76, 333
DpnII	GATC	2 cut(s)	74, 331
Eam1104I	CTCTTC	2 cut(s)	85, 247
EarI	CTCTTC	2 cut(s)	85, 247
Eco57I	CTGAAG	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	452, 549
FaeI	CATG	2 cut(s)	377, 397
FaiI	YATR	3 cut(s)	375, 395, 501
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	3 cut(s)	114, 360, 489
FatI	CATG	2 cut(s)	373, 393
Fnu4HI	GCNGC	3 cut(s)	198, 201, 530
Fsp4HI	GCNGC	3 cut(s)	198, 201, 530
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	3 cut(s)	198, 201, 530
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	31, 482
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	377, 397
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	1 cut(s)	554
HpaII	CCGG	2 cut(s)	31, 482
HphI	GGTGA	1 cut(s)	510
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	251, 559
Hpy188III	TCNNGA	4 cut(s)	188, 298, 404, 551
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	4 cut(s)	90, 121, 233, 303
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	197, 343, 370, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 389
HpyF3I	CTNAG	3 cut(s)	79, 117, 207
Hsp92II	CATG	2 cut(s)	377, 397
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	74, 331
Lsp1109I	GCAGC	2 cut(s)	209, 541
LweI	GCATC	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	522
MalI	GATC	2 cut(s)	76, 333
MboI	GATC	2 cut(s)	74, 331
MboII	GAAGA	4 cut(s)	102, 264, 392, 504
MluCI	AATT	2 cut(s)	54, 226
MnlI	CCTC	4 cut(s)	36, 86, 88, 435
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	31, 482
MspR9I	CCNGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	15, 389
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	74, 331
NlaIII	CATG	2 cut(s)	377, 397
NmuCI	GTSAC	1 cut(s)	522
NruI	TCGCGA	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	199, 202, 531
PspFI	CCCAGC	1 cut(s)	491
PspXI	VCTCGAGB	1 cut(s)	452
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	2 cut(s)	67, 458
RsaNI	GTAC	2 cut(s)	66, 457
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	198, 201, 530
Sau3AI	GATC	2 cut(s)	74, 331
ScaI	AGTACT	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	5 cut(s)	51, 85, 179, 268, 493
SfaNI	GCATC	1 cut(s)	379
Sfr274I	CTCGAG	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	54, 226
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	51, 73, 453
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	54, 226
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	2 cut(s)	197, 529
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	2 cut(s)	488, 504
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	571
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.