Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0033726

Physical Location & Seq

Genomic Coordinates Reverse (-)

36236973 .. 36238958

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGATGATGCTGTTCATGGTAATGGTGGTCTCTCTTCTAGTTGCAGTCGTGCATGGGCAGCAGAGCTACTTGGAAAACAACCAGCTCGACTGCGACAAGGACTCCAACATCACCGCCGGCTACATCTGCAACGGCGCCGCTCCCTCATGCGCCTCCTACGTCACTTTCCTCTCCATCAGCCACTACAACACCCCCACCTCAATCGCCTCCCTCCTCGGCTCCACCCCCTCCGACATCGCCGCCGCCAACAACATCTCCGACGTCGACCCCATCCCCACCGACACCTCCGTCCTCGTCCCCCTCAACTGCTCCTGCTCCGGCCCCTACTCCCAGCACAACGTCTCCTACACCCTGAAGCCCGACGACACCTACTTCGTCATCGCCAACAACACCTACCAGGGACTCACGACCTGTCAGGCCCTCAGGCATCAGAACCCCTACGACCCTCTGAACCTCGAGGGCGGCCTTGTCATAGAGGTGCCGATCAGGTGTGCTTGCCCCACCGCCAAACAGACCGCCGCCGGGATCAAGTACCTGCTGGCCTACCTCATCGACTTGGAAGACGATCTCGACAAAATCGCCATACGCTTCGCCGTAGATGTACCCACTTTGCTCGAAGCAAACAACTTTAAGACCTCCGACGACATCATCTATCCCTACCAAGCTGTTCTAGTTCCTCTCACAACCAAACCTTCTCCTCTTCAACTGAAGTATCCAAGCTCTCCTCCACCTCCGCCTCCTCCTCCTCTGCCGCCGTCATCACCAGTGCCTCCCTCACCACCAAGTGGGTCTTCCAACAACAATGGGGTGCTTGAAGGAGATCATGTGGGGGACAAAATTAAAGGGTTTATGGATCCTTCTCTGAGGCGCCAGTATCCTTTGGAGCTGGCGTTTTCAATGGCTCAGCTCGCTAAGAGCTGCGTTGCGCCTCAGATCAACTCACGACCCACCATGGCTCAAGCTTCTGGTACTCTATCTAAGATTCTTTCGTCAACTCTCGACTGGGATTCATCTAAAGCTGTGGATGTTGAACATTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

37.36

Weight (kDa)

4.77

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	50 - 106	2.1e-17	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	110 - 164	6e-26	LYK3/4/5 LysM2 domain
LysM2_NFP	PF23457	111 - 163	1.5e-08	NFP LysM2 domain
LysM3_LYK4_5	PF23473	179 - 228	1.9e-12	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0033726)

Species	Orthologous Gene IDs
rosa_samantha	Rh7AG310300 Rh7CG329300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AatII	GACGTC	1 cut(s)	267
AbsI	CCTCGAGG	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	546
AccB1I	GGYRCC	3 cut(s)	137, 481, 870
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	267
AclWI	GGATC	3 cut(s)	536, 851, 864
AcuI	CTGAAG	2 cut(s)	377, 731
AcyI	GRCGYC	3 cut(s)	138, 264, 871
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	3 cut(s)	536, 606, 973
AfiI	CCNNNNNNNGG	2 cut(s)	525, 788
AgsI	TTSAA	4 cut(s)	707, 818, 900, 1034
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	9 cut(s)	69, 88, 668, 723, 889, 910, 921, 965, 1022
AluI	AGCT	9 cut(s)	69, 88, 668, 723, 889, 910, 921, 965, 1022
Alw26I	GTCTC	2 cut(s)	37, 349
AlwI	GGATC	3 cut(s)	536, 851, 864
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	4 cut(s)	322, 420, 466, 543
ApeKI	GCWGC	2 cut(s)	61, 921
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspLEI	GCGC	4 cut(s)	140, 155, 873, 931
AspS9I	GGNCC	2 cut(s)	323, 421
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	3 cut(s)	106, 756, 771
AvaI	CYCGRG	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	698, 731
BamHI	GGATCC	1 cut(s)	856
BanI	GGYRCC	3 cut(s)	137, 481, 870
BbsI	GAAGAC	2 cut(s)	570, 786
BbvI	GCAGC	2 cut(s)	73, 908
BccI	CCATC	2 cut(s)	185, 281
BceAI	ACGGC	3 cut(s)	151, 581, 742
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	2 cut(s)	726, 888
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	37, 349
BfaI	CTAG	2 cut(s)	41, 674
BfoI	RGCGCY	2 cut(s)	141, 874
BfuAI	ACCTGC	1 cut(s)	546
BfuI	GTATCC	2 cut(s)	726, 888
BisI	GCNGC	8 cut(s)	62, 141, 243, 246, 466, 522, 755, 922
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	8 cut(s)	63, 142, 244, 247, 467, 523, 756, 923
Bme1390I	CCNGG	2 cut(s)	401, 526
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	323, 421
BmiI	GGNNCC	6 cut(s)	139, 223, 325, 483, 858, 872
BmrFI	CCNGG	2 cut(s)	401, 526
BmrI	ACTGGG	1 cut(s)	1015
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	1015
BpiI	GAAGAC	2 cut(s)	570, 786
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	945
BpuMI	CCSGG	1 cut(s)	526
BsaHI	GRCGYC	3 cut(s)	138, 264, 871
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	3 cut(s)	217, 400, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 788
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	767, 874, 1010
Bse21I	CCTNAGG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	217, 400, 954
BseGI	GGATG	2 cut(s)	273, 1033
BseLI	CCNNNNNNNGG	2 cut(s)	525, 788
BseMII	CTCAG	4 cut(s)	439, 857, 920, 947
BseNI	ACTGG	3 cut(s)	767, 874, 1010
BseRI	GAGGAG	6 cut(s)	206, 690, 717, 732, 735, 738
BseXI	GCAGC	2 cut(s)	73, 908
BseYI	CCCAGC	1 cut(s)	333
BshFI	GGCC	4 cut(s)	324, 422, 468, 545
BshNI	GGYRCC	3 cut(s)	137, 481, 870
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	120, 321, 525
BslFI	GGGAC	3 cut(s)	284, 417, 848
BslI	CCNNNNNNNGG	2 cut(s)	525, 788
BsmAI	GTCTC	2 cut(s)	37, 349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	3 cut(s)	284, 417, 848
BsnI	GGCC	4 cut(s)	324, 422, 468, 545
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
Bsp1720I	GCTNAGC	1 cut(s)	906
Bsp19I	CCATGG	1 cut(s)	954
BspANI	GGCC	4 cut(s)	324, 422, 468, 545
BspCNI	CTCAG	4 cut(s)	438, 858, 919, 946
BspLI	GGNNCC	6 cut(s)	139, 223, 325, 483, 858, 872
BspMI	ACCTGC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	536, 851, 864
BspT107I	GGYRCC	3 cut(s)	137, 481, 870
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	767, 874, 1010
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	217, 400, 954
BssMI	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
BssNI	GRCGYC	3 cut(s)	138, 264, 871
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	42, 708
BstACI	GRCGYC	3 cut(s)	138, 264, 871
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	5 cut(s)	121, 499, 543, 891, 912
BstDEI	CTNAG	6 cut(s)	425, 866, 906, 915, 933, 981
BstDSI	CCRYGG	1 cut(s)	954
BstF5I	GGATG	2 cut(s)	273, 1033
BstH2I	RGCGCY	2 cut(s)	141, 874
BstHHI	GCGC	4 cut(s)	140, 155, 873, 931
BstKTI	GATC	6 cut(s)	489, 531, 571, 826, 859, 939
BstMAI	GTCTC	2 cut(s)	37, 349
BstMBI	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 61, 129, 911
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	399, 524
BstV1I	GCAGC	2 cut(s)	73, 908
BstV2I	GAAGAC	2 cut(s)	570, 786
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu36I	CCTNAGG	1 cut(s)	425
BsuI	GTATCC	2 cut(s)	726, 888
BsuRI	GGCC	4 cut(s)	324, 422, 468, 545
BtgI	CCRYGG	1 cut(s)	954
BtgZI	GCGATG	2 cut(s)	223, 367
BtsCI	GGATG	2 cut(s)	273, 1033
BtsIMutI	CAGTG	1 cut(s)	774
BveI	ACCTGC	1 cut(s)	546
Cac8I	GCNNGC	5 cut(s)	121, 499, 543, 891, 912
CfoI	GCGC	4 cut(s)	140, 155, 873, 931
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	323, 421
Csp6I	GTAC	3 cut(s)	535, 605, 972
CviAII	CATG	5 cut(s)	19, 56, 150, 827, 955
CviQI	GTAC	3 cut(s)	535, 605, 972
DdeI	CTNAG	6 cut(s)	425, 866, 906, 915, 933, 981
DinI	GGCGCC	2 cut(s)	139, 872
DpnI	GATC	6 cut(s)	488, 530, 570, 825, 858, 938
DpnII	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
DraIII	CACNNNGTG	1 cut(s)	788
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	42, 708
EarI	CTCTTC	2 cut(s)	42, 708
EciI	GGCGGA	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	954
Eco31I	GGTCTC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	377, 731
Eco81I	CCTNAGG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	954
EgeI	GGCGCC	2 cut(s)	139, 872
EheI	GGCGCC	2 cut(s)	139, 872
ErhI	CCWWGG	1 cut(s)	954
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	5 cut(s)	22, 59, 153, 830, 958
FaiI	YATR	8 cut(s)	20, 57, 151, 476, 587, 828, 854, 956
FalI	AAGNNNNNCTT	2 cut(s)	778, 810
FaqI	GGGAC	3 cut(s)	284, 417, 848
FatI	CATG	5 cut(s)	18, 55, 149, 826, 954
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	8 cut(s)	62, 141, 243, 246, 466, 522, 755, 922
FokI	GGATG	2 cut(s)	260, 1040
Fsp4HI	GCNGC	8 cut(s)	62, 141, 243, 246, 466, 522, 755, 922
FspBI	CTAG	2 cut(s)	41, 674
GlaI	GCGC	4 cut(s)	139, 154, 872, 930
GluI	GCNGC	8 cut(s)	62, 141, 243, 246, 466, 522, 755, 922
GsaI	CCCAGC	1 cut(s)	337
HaeII	RGCGCY	2 cut(s)	141, 874
HaeIII	GGCC	4 cut(s)	324, 422, 468, 545
HapII	CCGG	3 cut(s)	120, 321, 525
HhaI	GCGC	4 cut(s)	140, 155, 873, 931
Hin1I	GRCGYC	3 cut(s)	138, 264, 871
Hin1II	CATG	5 cut(s)	22, 59, 153, 830, 958
Hin6I	GCGC	4 cut(s)	138, 153, 871, 929
HinP1I	GCGC	4 cut(s)	138, 153, 871, 929
HincII	GTYRAC	2 cut(s)	268, 996
HindII	GTYRAC	2 cut(s)	268, 996
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	4 cut(s)	104, 405, 985, 1010
HpaII	CCGG	3 cut(s)	120, 321, 525
HphI	GGTGA	3 cut(s)	106, 756, 771
Hpy166II	GTNNAC	2 cut(s)	268, 996
Hpy188I	TCNGA	7 cut(s)	235, 262, 435, 453, 643, 867, 936
Hpy188III	TCNNGA	4 cut(s)	409, 572, 945, 1001
Hpy8I	GTNNAC	2 cut(s)	268, 996
Hpy99I	CGWCG	4 cut(s)	266, 269, 368, 647
HpyAV	CCTTC	3 cut(s)	705, 812, 870
HpyCH4IV	ACGT	3 cut(s)	162, 264, 342
HpyCH4V	TGCA	4 cut(s)	4, 47, 55, 132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 61, 129, 911
HpyF3I	CTNAG	6 cut(s)	425, 866, 906, 915, 933, 981
HpySE526I	ACGT	3 cut(s)	162, 264, 342
Hsp92I	GRCGYC	3 cut(s)	138, 264, 871
Hsp92II	CATG	5 cut(s)	22, 59, 153, 830, 958
HspAI	GCGC	4 cut(s)	138, 153, 871, 929
KasI	GGCGCC	2 cut(s)	137, 870
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
LmnI	GCTCC	5 cut(s)	148, 227, 317, 323, 886
Lsp1109I	GCAGC	2 cut(s)	73, 908
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	41, 674
MaeII	ACGT	3 cut(s)	162, 264, 342
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	6 cut(s)	488, 530, 570, 825, 858, 938
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
MboII	GAAGA	4 cut(s)	29, 575, 695, 786
MflI	RGATCY	1 cut(s)	856
MluCI	AATT	1 cut(s)	840
Mly113I	GGCGCC	2 cut(s)	138, 871
MlyI	GAGTC	2 cut(s)	98, 399
MmeI	TCCRAC	5 cut(s)	132, 258, 285, 666, 822
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	2 cut(s)	633, 843
MslI	CAYNNNNRTG	2 cut(s)	23, 479
MspI	CCGG	3 cut(s)	120, 321, 525
MspR9I	CCNGG	2 cut(s)	401, 526
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	10, 61, 129, 911
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	2 cut(s)	138, 871
NciI	CCSGG	1 cut(s)	526
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	5 cut(s)	22, 59, 153, 830, 958
NlaIV	GGNNCC	6 cut(s)	139, 223, 325, 483, 858, 872
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	458
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	985, 1010
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	8 cut(s)	63, 142, 244, 247, 467, 523, 756, 923
PleI	GAGTC	2 cut(s)	98, 399
PluTI	GGCGCC	2 cut(s)	141, 874
PpsI	GAGTC	2 cut(s)	98, 399
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	6 cut(s)	139, 223, 325, 483, 858, 872
PspPI	GGNCC	2 cut(s)	323, 421
PspXI	VCTCGAGB	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	536, 606, 973
RsaNI	GTAC	3 cut(s)	535, 605, 972
RseI	CAYNNNNRTG	2 cut(s)	23, 479
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	633, 843
SatI	GCNGC	8 cut(s)	62, 141, 243, 246, 466, 522, 755, 922
Sau3AI	GATC	6 cut(s)	486, 528, 568, 823, 856, 936
Sau96I	GGNCC	2 cut(s)	323, 421
SchI	GAGTC	2 cut(s)	98, 399
ScrFI	CCNGG	2 cut(s)	401, 526
SfaNI	GCATC	1 cut(s)	439
SfoI	GGCGCC	2 cut(s)	139, 872
Sfr274I	CTCGAG	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	23, 479
SmlI	CTYRAG	2 cut(s)	458, 960
SmoI	CTYRAG	2 cut(s)	458, 960
Sse9I	AATT	1 cut(s)	840
SspDI	GGCGCC	2 cut(s)	137, 870
SspMI	CTAG	2 cut(s)	41, 674
StyD4I	CCNGG	2 cut(s)	399, 524
StyI	CCWWGG	1 cut(s)	954
TaiI	ACGT	3 cut(s)	165, 267, 345
TaqI	TCGA	7 cut(s)	90, 267, 459, 555, 573, 618, 1002
TasI	AATT	1 cut(s)	840
TauI	GCSGC	6 cut(s)	143, 245, 248, 468, 524, 757
TfiI	GAWTC	2 cut(s)	985, 1010
Tru1I	TTAA	2 cut(s)	633, 843
Tru9I	TTAA	2 cut(s)	633, 843
TscAI	CASTG	1 cut(s)	774
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	61, 921
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	7, 1002
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	774
Van91I	CCANNNNNTGG	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	2 cut(s)	41, 674
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.