Rh7CG393400

Golgi to ER traffic protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0030486
Physical Location & Seq
Reverse (-)
49958939 .. 49961788
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG393400.1

Sequence Viewer

Length: 417 bp
ATGTTCTTCTCTCTTGTCAGGTGGTCTGCAGGAGTTTGGTGCACCTATGGGTGGGGCTCCAGCAATACATGTTTGCTAGCTAACTCTATGTACTTTGAATCTCCTGAGGTGGACATGGTTACAGTCGCACAAAATTTTGTCAGTGGAAACAACCCAAAAGGGTTTGCTTCTACTTTAGTTCATTTCATGGGCAAGTCCAACATTCAGCCTAAGATCCGTCTTTACTATAGCAAAAGGAGGAAGGTGCCCTTCTTCCAAAATCTAAAGTTGGATCCACATCTTGGTGCTCTTGTGGGGAGATATATAAGGAAGCTGAGAAGTTTGCTTATCAGAATGGAGCAAAGGTGGCTGTTATTTATGGTGGAGCGCCGATGGGTTAGCAGCTTCGTGATCTGGAGAGAGTTGTTGACATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF410

Protein Analysis

138

Amino Acids

16.24

Weight (kDa)

10.43

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030486)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0225301
rosa_samantha Rh7CG393400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 281
AclWI GGATC 3 cut(s) 208, 266, 279
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 51, 281
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 3 cut(s) 80, 313, 384
AluI AGCT 3 cut(s) 80, 313, 384
Alw21I GWGCWC 2 cut(s) 44, 289
Alw44I GTGCAC 1 cut(s) 40
AlwI GGATC 3 cut(s) 208, 266, 279
ApaLI GTGCAC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 133
AspLEI GCGC 1 cut(s) 369
AsuNHI GCTAGC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 105
BaeGI GKGCMC 2 cut(s) 44, 249
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 44, 289
BbvI GCAGC 1 cut(s) 393
BccI CCATC 1 cut(s) 366
BfaI CTAG 2 cut(s) 77, 415
BfmI CTRYAG 2 cut(s) 27, 226
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
BmiI GGNNCC 3 cut(s) 58, 246, 273
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 2 cut(s) 43, 415
BsaBI GATNNNNATC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 281
Bse21I CCTNAGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 1 cut(s) 410
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 51, 281
BseMII CTCAG 2 cut(s) 96, 305
BseSI GKGCMC 2 cut(s) 44, 249
BseXI GCAGC 1 cut(s) 393
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 2 cut(s) 44, 289
BslI CCNNNNNNNGG 2 cut(s) 51, 281
Bsp1286I GDGCHC 4 cut(s) 44, 59, 249, 289
Bsp143I GATC 3 cut(s) 213, 271, 390
BspCNI CTCAG 2 cut(s) 97, 306
BspLI GGNNCC 3 cut(s) 58, 246, 273
BspMAI CTGCAG 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 3 cut(s) 208, 266, 279
BspT107I GGYRCC 1 cut(s) 244
BssMI GATC 3 cut(s) 213, 271, 390
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 105, 210, 314
BstF5I GGATG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 216, 274, 393
BstMBI GATC 3 cut(s) 213, 271, 390
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 27, 226
BstSLI GKGCMC 2 cut(s) 44, 249
BstV1I GCAGC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 213, 271
BstYI RGATCY 2 cut(s) 213, 271
Bsu36I CCTNAGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 69, 115, 187
CviJI RGCY 6 cut(s) 57, 80, 208, 313, 349, 384
CviKI_1 RGCY 6 cut(s) 57, 80, 208, 313, 349, 384
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 105, 210, 314
DpnI GATC 3 cut(s) 215, 273, 392
DpnII GATC 3 cut(s) 213, 271, 390
Eco24I GRGCYC 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 3 cut(s) 72, 118, 190
FaiI YATR 9 cut(s) 48, 70, 89, 116, 188, 228, 303, 305, 359
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 3 cut(s) 68, 114, 186
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 382
FspBI CTAG 2 cut(s) 77, 415
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 382
GsuI CTGGAG 2 cut(s) 43, 415
HaeII RGCGCY 1 cut(s) 370
HhaI GCGC 1 cut(s) 369
Hin1II CATG 3 cut(s) 72, 118, 190
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 42, 112, 408
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 3 cut(s) 104, 388, 394
Hpy8I GTNNAC 3 cut(s) 42, 112, 408
HpyAV CCTTC 2 cut(s) 235, 259
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 29, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 3 cut(s) 105, 210, 314
Hsp92II CATG 3 cut(s) 72, 118, 190
HspAI GCGC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 213, 271, 390
LmnI GCTCC 3 cut(s) 62, 337, 364
LpnPI CCDG 5 cut(s) 4, 15, 73, 117, 379
Lsp1109I GCAGC 1 cut(s) 393
MaeI CTAG 2 cut(s) 77, 415
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 215, 273, 392
MboI GATC 3 cut(s) 213, 271, 390
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 213, 271
MhlI GDGCHC 4 cut(s) 44, 59, 249, 289
MluCI AATT 1 cut(s) 133
MmeI TCCRAC 2 cut(s) 222, 249
MnlI CCTC 2 cut(s) 100, 231
MslI CAYNNNNRTG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 3 cut(s) 213, 271, 390
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 3 cut(s) 72, 118, 190
NlaIV GGNNCC 3 cut(s) 58, 246, 273
NspI RCATGY 1 cut(s) 72
PciI ACATGT 1 cut(s) 68
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 383
PscI ACATGT 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 58, 246, 273
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 213, 271
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 282
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 3 cut(s) 213, 271, 390
SduI GDGCHC 4 cut(s) 44, 59, 249, 289
SetI ASST 8 cut(s) 23, 47, 82, 111, 246, 315, 347, 386
SfcI CTRYAG 2 cut(s) 27, 226
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 77, 415
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 381
TspDTI ATGAA 2 cut(s) 170, 175
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 281
VneI GTGCAC 1 cut(s) 40
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 72
XspI CTAG 2 cut(s) 77, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.