Rh7DG039800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031298
Physical Location & Seq
Reverse (-)
2936298 .. 2942787
6490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG039800.1

Sequence Viewer

Length: 432 bp
ATGAAATCTAGAACCATCACCAGCTCCTTCGCCAAAATCAAGTCACTTTCCTTCTCCGAGATCACACCCCATCAGCTCTCCAACCTCTCAATTGTCAAATCCGCCTCCACCTTCGCCTTCGCCTTCGCCAGATTTCATGTAAATTCTGATAAGAGAAGGGAGAGTGGCAAGGGAATTGATGAGGTAGAACACAGAAGAAGAGTTGAGGAAACTTGGGAATGCGAATTCAAGCAATTTGAGTCATTAGATCTATATCTTTACATGTGGTGTATTGTGGTTAAAAGCTCAAGAAGCTCAAGAAAGAAAAGAGGAGGAGTTATTGCCCAAGGGTTAGTACAGTGGCTGGGAACAACACCAGATGAAGCCACAACAATCACACCGAGGTACCCTAGCTTCAACCTACTTTTAAAGGACAATAGTCTCCTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.37

Weight (kDa)

9.65

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031298)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004311.1_g000037
rosa_samantha Rh7DG039800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 384
AciI CCGC 1 cut(s) 102
AcsI RAATTY 2 cut(s) 142, 224
AfaI GTAC 2 cut(s) 336, 386
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 229, 397
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 5 cut(s) 24, 76, 285, 294, 393
AluI AGCT 5 cut(s) 24, 76, 285, 294, 393
Alw26I GTCTC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 343
ApoI RAATTY 2 cut(s) 142, 224
Asp718I GGTACC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 10
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BanI GGYRCC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 377, 409
BccI CCATC 2 cut(s) 23, 78
BciT130I CCWGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 2 cut(s) 9, 390
BglII AGATCT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 425
BoxI GACNNNNGTC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 271, 280
BsaBI GATNNNNATC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 325, 380
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 325, 380
BseJI GATNNNNATC 1 cut(s) 252
BseRI GAGGAG 2 cut(s) 324, 327
BseYI CCCAGC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 60, 247
BspACI CCGC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 325, 380
BssMI GATC 2 cut(s) 60, 247
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 193
BstKTI GATC 2 cut(s) 63, 250
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 2 cut(s) 60, 247
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 343
Csp6I GTAC 2 cut(s) 335, 385
CviAII CATG 2 cut(s) 137, 262
CviJI RGCY 7 cut(s) 24, 76, 285, 294, 343, 365, 393
CviKI_1 RGCY 7 cut(s) 24, 76, 285, 294, 343, 365, 393
CviQI GTAC 2 cut(s) 335, 385
DpnI GATC 2 cut(s) 62, 249
DpnII GATC 2 cut(s) 60, 247
DraI TTTAAA 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 140, 265
FaiI YATR 4 cut(s) 138, 253, 263, 430
FatI CATG 2 cut(s) 136, 261
FspBI CTAG 2 cut(s) 9, 390
GsaI CCCAGC 1 cut(s) 347
Hin1II CATG 2 cut(s) 140, 265
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 58, 148
Hpy188III TCNNGA 3 cut(s) 9, 288, 297
HpyAV CCTTC 6 cut(s) 37, 61, 121, 127, 133, 150
HpyCH4III ACNGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92II CATG 2 cut(s) 140, 265
KpnI GGTACC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 60, 247
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 34, 142, 329, 369, 410
MaeI CTAG 2 cut(s) 9, 390
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 62, 249
MboI GATC 2 cut(s) 60, 247
MboII GAAGA 2 cut(s) 207, 210
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 247
MluCI AATT 5 cut(s) 90, 142, 174, 224, 233
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 7 cut(s) 95, 115, 175, 199, 302, 305, 375
MseI TTAA 2 cut(s) 279, 407
MspR9I CCNGG 1 cut(s) 425
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 2 cut(s) 60, 247
NlaIII CATG 2 cut(s) 140, 265
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 265
PciI ACATGT 1 cut(s) 261
PctI GAATGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 261
PshAI GACNNNNGTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 343
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 336, 386
RsaNI GTAC 2 cut(s) 335, 385
SaqAI TTAA 2 cut(s) 279, 407
Sau3AI GATC 2 cut(s) 60, 247
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 286, 295
SmoI CTYRAG 2 cut(s) 286, 295
Sse9I AATT 5 cut(s) 90, 142, 174, 224, 233
SsiI CCGC 1 cut(s) 102
SspMI CTAG 2 cut(s) 9, 390
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 339
TasI AATT 5 cut(s) 90, 142, 174, 224, 233
TatI WGTACW 1 cut(s) 334
Tru1I TTAA 2 cut(s) 279, 407
Tru9I TTAA 2 cut(s) 279, 407
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 17, 125, 375
TspRI CASTG 1 cut(s) 344
XapI RAATTY 2 cut(s) 142, 224
XbaI TCTAGA 1 cut(s) 8
XceI RCATGY 1 cut(s) 265
XspI CTAG 2 cut(s) 9, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.