Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0030499

Physical Location & Seq

Genomic Coordinates Forward (+)

8882471 .. 8882965

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCATTTCTTCTTTCATTTTTCCTGACATTGGGTGCAGTCATGAGGTTCTTCTATGGTTTTCTGCTCAAGGACTACAACATAGCTTTTCCAAACATACTGGGGGTCATCTTTGGGATTGTGCAAATGGTGCTATACATAGTGTACAAGAATGCCAAGAAAGTACTTCTGGAGGAGCCAAGCAAGGTTCAGGAGCTATCAGACGATATTACTGAGGTGCTGAATATCAGCACCATGGTGTGTCCACACCTAACCCCAGTGGTTCTTCAGCCAAATGACATTAACCTCATTGAAGTAGTACTTGACCCAAATAATATTATCAAGGAAATCAAGACCGAAGAAACCAAGGAAGACATGGACGATGCCACCACTAAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008515 GO:0008643 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0030001 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

126

Amino Acids

14.34

Weight (kDa)

4.55

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	1 - 54	8.2e-12	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0030499)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0189381
rosa_samantha	Rh7DG104300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	146, 165, 300
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	293
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	2 cut(s)	86, 196
AluI	AGCT	2 cut(s)	86, 196
BbsI	GAAGAC	1 cut(s)	357
BfaI	CTAG	1 cut(s)	379
BmcAI	AGTACT	2 cut(s)	165, 300
BmiI	GGNNCC	1 cut(s)	177
BmrI	ACTGGG	2 cut(s)	110, 251
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	2 cut(s)	110, 251
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	234, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	105, 257
BseDI	CCNNGG	2 cut(s)	234, 345
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	105, 257
BseRI	GAGGAG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	105, 257
BssECI	CCNNGG	2 cut(s)	234, 345
BssT1I	CCWWGG	2 cut(s)	234, 345
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	264
CciI	TCATGA	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	145, 164, 299
CviAII	CATG	3 cut(s)	43, 235, 355
CviJI	RGCY	4 cut(s)	86, 178, 196, 271
CviKI_1	RGCY	4 cut(s)	86, 178, 196, 271
CviQI	GTAC	3 cut(s)	145, 164, 299
DdeI	CTNAG	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	234, 345
Eco57I	CTGAAG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	234, 345
ErhI	CCWWGG	2 cut(s)	234, 345
FaeI	CATG	3 cut(s)	46, 238, 358
FaiI	YATR	8 cut(s)	44, 57, 83, 98, 136, 140, 236, 356
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	3 cut(s)	42, 234, 354
FspBI	CTAG	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	191
Hin1II	CATG	3 cut(s)	46, 238, 358
Hpy166II	GTNNAC	2 cut(s)	145, 245
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	5 cut(s)	25, 43, 170, 191, 331
Hpy8I	GTNNAC	2 cut(s)	145, 245
HpyCH4V	TGCA	2 cut(s)	38, 124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	46, 238, 358
LmnI	GCTCC	2 cut(s)	175, 193
LpnPI	CCDG	5 cut(s)	38, 86, 155, 176, 270
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	379
MboII	GAAGA	4 cut(s)	43, 257, 350, 362
MnlI	CCTC	4 cut(s)	39, 166, 208, 296
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	234
NlaIII	CATG	3 cut(s)	46, 238, 358
NlaIV	GGNNCC	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	177
RsaI	GTAC	3 cut(s)	146, 165, 300
RsaNI	GTAC	3 cut(s)	145, 164, 299
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	282
ScaI	AGTACT	2 cut(s)	165, 300
SetI	ASST	7 cut(s)	50, 88, 189, 198, 219, 252, 288
SfaNI	GCATC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	234, 345
TaqII	GACCGA	1 cut(s)	350
TatI	WGTACW	3 cut(s)	144, 163, 298
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	1 cut(s)	379
ZrmI	AGTACT	2 cut(s)	165, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.