Rh7DG405200
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031145
Physical Location & Seq
Reverse (-)
56300048 .. 56305536
5489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG405200.1

Sequence Viewer

Length: 495 bp
ATGATGGGTGGAAGTTCGATTGATGATGACTGGGAGCTTCCCTTTTCTAATGCTGCTCGCACTGTGATCTTAGTTGGACGCACTGGTAATGGAAAAAGTGCCACAGGCAACAGCATTCTTGGCAAAAAATCCTTCAGTTCCAAGCGTAGCTCTAGTGGTGTCATGAGCAATTGTGAATTGAAGACTGCTATCTTGAGAGATGGACAAGAAGTTAATGTCCTGTCATCTTCTCCGGCTTTCCACAATCAGTCTTACAGGCTTTGTTTTCTGATTTGCTCCAAAGGGCGAGTATTGAATATACAGGTTGACAAGGAGACTGTATCTGGGAAGTGCTTTGGCAGATCAAAAGGATACCCATATGCTCATGTCTACGAGTATTCCAAATTGCTGTGGATTCTGGTGTTGTTGAAACCAACATCATGCGAGAAGTTCCTCCATGCCTTCCAGTTTGGCTTGCAAAGTTTTGAGACTTCTGTGCCTCTTGCAGTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

9.28

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 21 - 75 4.7e-18 AIG1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031145)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001621.1_g000001
rosa_samantha Rh7DG405200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 181, 295, 409
AluBI AGCT 2 cut(s) 37, 150
AluI AGCT 2 cut(s) 37, 150
Alw26I GTCTC 2 cut(s) 308, 461
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 194
BciVI GTATCC 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 308, 461
BfaI CTAG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 344
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 214
Bse1I ACTGG 3 cut(s) 35, 88, 445
BseNI ACTGG 3 cut(s) 35, 88, 445
BseXI GCAGC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 308, 461
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 66, 341
BspHI TCATGA 1 cut(s) 162
BsrI ACTGG 3 cut(s) 35, 88, 445
BssMI GATC 2 cut(s) 66, 341
Bst4CI ACNGT 2 cut(s) 64, 319
BstC8I GCNNGC 2 cut(s) 58, 455
BstDEI CTNAG 1 cut(s) 70
BstKTI GATC 2 cut(s) 69, 344
BstMAI GTCTC 2 cut(s) 308, 461
BstMBI GATC 2 cut(s) 66, 341
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 188
BsuI GTATCC 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 60, 81
Cac8I GCNNGC 2 cut(s) 58, 455
CciI TCATGA 1 cut(s) 162
CseI GACGC 1 cut(s) 87
CviAII CATG 4 cut(s) 163, 365, 420, 437
CviJI RGCY 5 cut(s) 37, 150, 236, 259, 453
CviKI_1 RGCY 5 cut(s) 37, 150, 236, 259, 453
DdeI CTNAG 1 cut(s) 70
DpnI GATC 2 cut(s) 68, 343
DpnII GATC 2 cut(s) 66, 341
Eco57I CTGAAG 1 cut(s) 118
FaeI CATG 4 cut(s) 166, 368, 423, 440
FaiI YATR 7 cut(s) 164, 299, 358, 360, 366, 421, 438
FatI CATG 4 cut(s) 162, 364, 419, 436
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 54
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 166, 368, 423, 440
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 1 cut(s) 394
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 307, 370
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 163, 193
Hpy8I GTNNAC 2 cut(s) 307, 370
HpyAV CCTTC 2 cut(s) 142, 451
HpyCH4III ACNGT 2 cut(s) 64, 319
HpyCH4V TGCA 2 cut(s) 457, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 4 cut(s) 166, 368, 423, 440
Kzo9I GATC 2 cut(s) 66, 341
LmnI GCTCC 2 cut(s) 34, 281
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 487
MalI GATC 2 cut(s) 68, 343
MboI GATC 2 cut(s) 66, 341
MboII GAAGA 2 cut(s) 193, 219
MfeI CAATTG 1 cut(s) 169
MluCI AATT 3 cut(s) 169, 176, 383
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 2 cut(s) 443, 489
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 358
NdeII GATC 2 cut(s) 66, 341
NlaIII CATG 4 cut(s) 166, 368, 423, 440
NmuCI GTSAC 1 cut(s) 487
PagI TCATGA 1 cut(s) 162
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 66, 341
SetI ASST 4 cut(s) 39, 152, 306, 494
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 169, 176, 383
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 64, 319
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 169, 176, 383
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 67, 88
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 487
TspRI CASTG 2 cut(s) 67, 88
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.