Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0033253

Physical Location & Seq

Genomic Coordinates Reverse (-)

58184807 .. 58184995

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG413700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCTGTTGATGCTCAGCTGATCAATGCTTATAGTAACAGCTCGTCATCGCCGCAGAACGGGAGACAGGCCAACGGAAGTGAGCCACGTGGAATGCAGAGCGGTGGGTGTTGGGACAACGTCGGTGAGAGTTCATCAGCCACTACTGGCGGCGTGGCGCTGAGTATTTCGATTGAAGATTATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009889 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031668 GO:0033554 GO:0042221 GO:0042493 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0080090 GO:0104004 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

62

Amino Acids

6.32

Weight (kDa)

4.05

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0033253)

Species	Orthologous Gene IDs
rosa_samantha	Rh7CG441300 Rh7DG413700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	3 cut(s)	53, 102, 150
AcvI	CACGTG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	2 cut(s)	19, 42
AluI	AGCT	2 cut(s)	19, 42
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	137
BbrPI	CACGTG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	2 cut(s)	53, 151
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	2 cut(s)	54, 152
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	29, 152
BseNI	ACTGG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	3 cut(s)	53, 102, 150
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	28, 153
BsrBI	CCGCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	15, 161
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	71
BtgZI	GCGATG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	160
CviJI	RGCY	6 cut(s)	5, 19, 42, 71, 85, 140
CviKI_1	RGCY	6 cut(s)	5, 19, 42, 71, 85, 140
DdeI	CTNAG	2 cut(s)	15, 161
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco72I	CACGTG	1 cut(s)	89
FaiI	YATR	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	53, 151
Fsp4HI	GCNGC	2 cut(s)	53, 151
FspBI	CTAG	1 cut(s)	187
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	53, 151
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	88, 120
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	15, 161
HpySE526I	ACGT	2 cut(s)	88, 120
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	53, 132
MaeI	CTAG	1 cut(s)	187
MaeII	ACGT	2 cut(s)	88, 120
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	99
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	54, 152
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	89
PspCI	CACGTG	1 cut(s)	89
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	19
SatI	GCNGC	2 cut(s)	53, 151
Sau3AI	GATC	1 cut(s)	21
SetI	ASST	4 cut(s)	21, 44, 91, 123
SgeI	CNNG	7 cut(s)	55, 73, 80, 99, 101, 159, 166
SsiI	CCGC	3 cut(s)	53, 102, 150
SspMI	CTAG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	91, 123
TaqI	TCGA	1 cut(s)	170
TauI	GCSGC	2 cut(s)	55, 153
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.