Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0034666

Physical Location & Seq

Genomic Coordinates Forward (+)

6970338 .. 6971844

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCAGGCTGATCTCAAGAGCTTGGGAGATACCTACTCATTTCAACTGTTGTCTAATGAAGATGGTGTCTCTCTTGAATATTATAATTGCCCAACAAGTGGAGGTAACTCAAGTGCTCACTATTATACTGGTGCTGTTGCTGACATCATCCGTACAACCTTGGGACCAAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTATTGTAGTAACCAATGACGGGAATGCCATTCTGCGAGAATTGGATCTTGCGCACCCAGCAGCAAAGGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

93

Amino Acids

9.89

Weight (kDa)

5.07

Isoelectric Point (pI)

22.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	46 - 91	1.9e-16	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034666)

Species	Orthologous Gene IDs
rosa_wichuraiana	Rw1G003700 Rw1G027220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
Acc16I	TGCGCA	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	98
AclWI	GGATC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	98, 225
AgsI	TTSAA	2 cut(s)	44, 77
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	164, 171
AvaII	GGWCC	2 cut(s)	164, 171
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	164, 171
BmgT120I	GGNCC	2 cut(s)	164, 171
BmiI	GGNNCC	1 cut(s)	165
BmsI	GCATC	2 cut(s)	174, 184
BoxI	GACNNNNGTC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	159, 167
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 225
Bse1I	ACTGG	2 cut(s)	133, 195
BseDI	CCNNGG	2 cut(s)	159, 167
BseGI	GGATG	2 cut(s)	147, 199
BseLI	CCNNNNNNNGG	2 cut(s)	98, 225
BseNI	ACTGG	2 cut(s)	133, 195
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	98, 225
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	10, 250
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	133, 195
BssECI	CCNNGG	2 cut(s)	159, 167
BssMI	GATC	2 cut(s)	10, 250
BssT1I	CCWWGG	2 cut(s)	159, 167
Bst4CI	ACNGT	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	147, 199
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	13, 253
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	10, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 272
BstPAI	GACNNNNGTC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	147, 199
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	164, 171
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	2 cut(s)	8, 21
CviKI_1	RGCY	2 cut(s)	8, 21
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	2 cut(s)	12, 252
DpnII	GATC	2 cut(s)	10, 250
Eco130I	CCWWGG	2 cut(s)	159, 167
Eco47I	GGWCC	2 cut(s)	164, 171
EcoT14I	CCWWGG	2 cut(s)	159, 167
ErhI	CCWWGG	2 cut(s)	159, 167
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	84, 126, 176
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	134, 206
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	198
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	16, 74
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 272
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	10, 250
LpnPI	CCDG	3 cut(s)	114, 176, 276
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	174, 184
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	104, 214
MalI	GATC	2 cut(s)	12, 252
MboI	GATC	2 cut(s)	10, 250
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	85, 245
MnlI	CCTC	2 cut(s)	95, 197
MseI	TTAA	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	263, 272
NdeII	GATC	2 cut(s)	10, 250
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	165
NsbI	TGCGCA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	164, 171
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	10, 250
Sau96I	GGNCC	2 cut(s)	164, 171
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	6 cut(s)	23, 35, 106, 161, 173, 208
SfaNI	GCATC	2 cut(s)	174, 184
SinI	GGWCC	2 cut(s)	164, 171
SmlI	CTYRAG	2 cut(s)	14, 109
SmoI	CTYRAG	2 cut(s)	14, 109
Sse9I	AATT	2 cut(s)	85, 245
SspI	AATATT	1 cut(s)	80
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	159, 167
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	2 cut(s)	85, 245
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	164, 171
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.