Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015830

Physical Location & Seq

Genomic Coordinates Reverse (-)

1010389 .. 1021747

Gene Structure 11359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGGCTTCGCTTCTCTTCCTCCAACCTCTCACCAATCTCTCTTCCTCCACCACCCTCGTCTTTCTCCGTAATCCCCACCACATCCCCACTTCAACCTCCCTTAAACCCTCCAACACCCCCAAACCCCTCACATTCAAATCCTTCACTACTTCCTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTACAACCCGAAATCCGACCCGTCCTCCAAGAACTCGCTGACAGCTTTGATCTTCCTCCGGACTACTTTGCTAAGCTGCCTAACGATCTTCGTCTCGACCTGAATGACGCTGCTTTTGACCTTTCAAATGGAAAGATCATTGACGAGTGTGGTCAAGAGTTGGGGGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGTAGCTGACACATCAACGTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAGACAATGCCAAATCAGCACTTGGGAAGCGTTTGGTTTCGGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTGAAGGCGAACTACAAAAGATTGCAAAAACACTGACCAGGGCCGGAAAGCTTCTATCTGCAAGTTCAACTTCCACTGTGACTGATACAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCCACTGTTGGGGCTATCATCAGCTTTGCCTTCGGGATTCTTTCATGGCAACTGGCTCAAGGCGTCCAAAACACCCCAGAGAGTTCATTGCAGTATGCAAACGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGGGGAGCTCTACTTGCAGCCTGCTATTCCTCAGCCTTATTGTCTGCTTTTACTACCTTTGGACTTATCTTACTTGGAAGGCAACTAGACTCTCTCAGCTGCTCAGCCTCCGACCTAACCCCCCTCCTCGGCTCCGCCTCCACCAACCTCAACACCACCCTCCTCGCCTCCTTCCTCTGCTCCCGCTTCACCGCCATCTCCACCAGGTTCACCGAAACCACCTATGCCGTGGACAACACGTATCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCAGCCGCCGGCGGCCTCTCCTACTACCTCTTCGGCTTTGCTTTCGCCTACGGCGCCCCCTCGAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCAAGGACTACCCCTCCCCAGATTTCGCCGGAGACTACAGCTTCTTCCTCTACCAATGGGCCTTCGCCATCGCGGCCGCCGGAATCACCAGCGGCTCAATCGCCGAGAGAACCCAGTTTGTTGCGTACCTTATTTATTCTTCATTCTTAACCGGCTTTGTCTATCCGGTAGTTTCTCATTGGTTCTGGTCAGCCGACGGCTGGGCTAGTCCATTTCGGCCTGATGACTTACTTTTCGGCTCCGGCGCTATTGACTTTGCCGGATCCGGCGTCGTCCATATGGTCGGTGGGATCGCCGGTTTATGGGGTGCCCTAATTGAAGGACCGAGAATCGGCCGGTTCGACCGGGCCGGCCGGTCCGTGGCCTTACGTGGACACAACGCTTCTCTAGTTGTACTCGGCACATTCTTGCTTTGGTTCGGCTGGTACGGTTTCAACCCCGGCTCGTTTCTCACGATCGTTAAAGCATACGGCGACGGCGGCAGTTACTACGGGCAGTGGAGCGCCATCGGGAGGACAGCTGTCACCACCACACTGGCCGGGAGCACTGCCGCTCTAACCACCTTGTTCGGGAAGCGGTTGTTAGTTGGACACTGGAATGTTCTAGATGTTTGCAACGGTTTGTTAGGGGGGTTTGCTGCGATCACCTCCGGGTGCTCGGTGGTGGAACCGTGGGCGGCTATCGTGTGTGGGTTTGTTGCGGCATGGGTATTGATTGGTTGCAACAAGCTCGCAGAGAAGGTGAAATACGACGACCCTTTAGAGGCGGCGCAGCTGCACGGCGGGTGCGGCGCGTGGGGGTTGATATTTACTGGTTTGTTTGCGACGGAGGGGTATGTGAACGAGGTGTACTCTGGGAGGCCAGGGAGGCCGTACGGGCTGTTCATGGGCGGTGGAGGGAAGCTGCTGGCGGCACAAGTGGTGCAGATACTGGTGGTGCTGGGGTGGGTGACGGTGACTATGGGCCCGCTGTTTTATGGGCTTCATAAGCTGAAGCTGCTGAGGATCTCCGACGAGGATGAGACAGCGGGGATGGATCTGACCAGGCATGGAGGGTTTGCTTATGTGTACAACGATGAGGATGAGGCTTCTGGTAAGCCGGAGTTTATGATGAGGAGGGTGGGGCCCACAGATGATGCTAGTCCTTGCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

804

Amino Acids

86.32

Weight (kDa)

5.66

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	351 - 775	4.4e-132	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64780
fragaria_vesca	FvH4_6g01460
malus_domestica	MD04G1233500.v1.1
prunus_persica	Prupe.6G353100_v2.0.a1
pyrus_communis	pycom04g20740
rosa_chinensis	RchiOBHm_Chr3g0449081
rosa_laevigata	RLG00000025854
rosa_multiflora	Rmu_sc0003116.1_g000003 Rmu_sc0004874.1_g000017
rosa_rugosa	Rorug02G0617800.1
rosa_samantha	Rh3AG016300 Rh3BG016500 Rh3CG015600 Rh3DG016800
rosa_wichuraiana	Rw3G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1220, 1568
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	1814
AccII	CGCG	3 cut(s)	1125, 1334, 2054
AccIII	TCCGGA	1 cut(s)	244
AclWI	GGATC	5 cut(s)	1518, 1531, 1559, 2273, 2304
AcoI	YGGCCR	5 cut(s)	1243, 1335, 1594, 1612, 1797
AcuI	CTGAAG	3 cut(s)	638, 659, 2273
AcyI	GRCGYC	3 cut(s)	741, 1221, 1530
AfaI	GTAC	6 cut(s)	1388, 1656, 1688, 2111, 2135, 2330
AflIII	ACRYGT	1 cut(s)	1047
AgsI	TTSAA	6 cut(s)	93, 136, 312, 591, 1580, 1696
AjnI	CCWGG	4 cut(s)	560, 1013, 2122, 2303
Alw21I	GWGCWC	3 cut(s)	820, 1808, 1919
Alw26I	GTCTC	4 cut(s)	284, 347, 1287, 2276
AlwI	GGATC	5 cut(s)	1518, 1531, 1559, 2273, 2304
AlwNI	CAGNNNCTG	1 cut(s)	2191
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	244
ApaI	GGGCCC	2 cut(s)	2228, 2388
ArsI	GACNNNNNNTTYG	4 cut(s)	284, 316, 1478, 1510
Asp700I	GAANNNNTTC	1 cut(s)	1235
AspLEI	GCGC	7 cut(s)	1112, 1127, 1223, 1508, 1766, 2032, 2054
AspS9I	GGNCC	9 cut(s)	564, 1320, 1583, 1608, 1617, 2224, 2225, 2384, 2385
AsuC2I	CCSGG	4 cut(s)	1607, 1701, 1801, 1912
AsuNHI	GCTAGC	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	1583, 1617
BaeGI	GKGCMC	3 cut(s)	1573, 2228, 2388
BamHI	GGATCC	1 cut(s)	1523
BanI	GGYRCC	2 cut(s)	1220, 1568
BanII	GRGCYC	3 cut(s)	820, 2228, 2388
BarI	GAAGNNNNNNTAC	6 cut(s)	519, 551, 1043, 1075, 1991, 2023
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	1069
Bbv12I	GWGCWC	3 cut(s)	820, 1808, 1919
BbvCI	CCTCAGC	2 cut(s)	841, 2261
BccI	CCATC	4 cut(s)	1013, 1337, 1775, 2287
BceAI	ACGGC	8 cut(s)	1022, 1234, 1249, 1474, 1747, 1753, 2056, 2116
BcgI	CGANNNNNNTGC	2 cut(s)	1972, 2006
BciT130I	CCWGG	4 cut(s)	562, 1015, 2124, 2305
BcnI	CCSGG	4 cut(s)	1607, 1701, 1801, 1912
BcoDI	GTCTC	4 cut(s)	284, 347, 1287, 2276
BfaI	CTAG	6 cut(s)	417, 896, 1467, 1649, 1865, 2400
BfmI	CTRYAG	1 cut(s)	1297
BfoI	RGCGCY	3 cut(s)	1224, 1509, 1767
BglI	GCCNNNNNGGC	3 cut(s)	1334, 2128, 2137
BlpI	GCTNAGC	2 cut(s)	258, 913
Bme1390I	CCNGG	8 cut(s)	562, 1015, 1607, 1701, 1801, 1912, 2124, 2305
Bme18I	GGWCC	2 cut(s)	1583, 1617
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	9 cut(s)	564, 1320, 1583, 1608, 1617, 2224, 2225, 2384, 2385
BmrFI	CCNGG	8 cut(s)	562, 1015, 1607, 1701, 1801, 1912, 2124, 2305
BmrI	ACTGGG	1 cut(s)	1369
BmsI	GCATC	2 cut(s)	624, 2386
BmtI	GCTAGC	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	1369
BoxI	GACNNNNGTC	1 cut(s)	1781
BpiI	GAAGAC	1 cut(s)	1069
BplI	GAGNNNNNCTC	4 cut(s)	802, 834, 2096, 2128
Bpu10I	CCTNAGC	2 cut(s)	841, 2261
Bpu1102I	GCTNAGC	2 cut(s)	258, 913
BpuEI	CTTGAG	2 cut(s)	720, 1247
BpuMI	CCSGG	4 cut(s)	1607, 1701, 1801, 1912
BsaAI	YACGTR	2 cut(s)	1050, 1631
BsaHI	GRCGYC	3 cut(s)	741, 1221, 1530
BsaJI	CCNNGG	7 cut(s)	561, 937, 1038, 1620, 1699, 1931, 2123
BsaWI	WCCGGW	2 cut(s)	244, 1426
BsaXI	ACNNNNNCTCC	6 cut(s)	195, 225, 344, 374, 1259, 1289
Bse118I	RCCGGY	7 cut(s)	1112, 1175, 1412, 1556, 1596, 1610, 1614
Bse1I	ACTGG	7 cut(s)	505, 735, 1375, 1800, 1859, 2077, 2196
Bse3DI	GCAATG	1 cut(s)	764
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	4 cut(s)	562, 1015, 2124, 2305
BseDI	CCNNGG	7 cut(s)	561, 937, 1038, 1620, 1699, 1931, 2123
BseGI	GGATG	5 cut(s)	81, 639, 2284, 2298, 2347
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	4 cut(s)	855, 919, 927, 2252
BseNI	ACTGG	7 cut(s)	505, 735, 1375, 1800, 1859, 2077, 2196
BseRI	GAGGAG	4 cut(s)	926, 962, 1046, 2389
BseSI	GKGCMC	3 cut(s)	1573, 2228, 2388
BseX3I	CGGCCG	4 cut(s)	1243, 1335, 1594, 1612
BseYI	CCCAGC	2 cut(s)	1461, 2200
BsgI	GTGCAG	2 cut(s)	2021, 2204
Bsh1236I	CGCG	3 cut(s)	1125, 1334, 2054
Bsh1285I	CGRYCG	6 cut(s)	1246, 1338, 1597, 1606, 1615, 1719
BshNI	GGYRCC	2 cut(s)	1220, 1568
BsiEI	CGRYCG	6 cut(s)	1246, 1338, 1597, 1606, 1615, 1719
BsiHKAI	GWGCWC	3 cut(s)	820, 1808, 1919
BsiHKCI	CYCGRG	1 cut(s)	659
BsiWI	CGTACG	1 cut(s)	2133
BslFI	GGGAC	1 cut(s)	528
BsmAI	GTCTC	4 cut(s)	284, 347, 1287, 2276
BsmBI	CGTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	659
Bsp120I	GGGCCC	2 cut(s)	2224, 2384
Bsp1286I	GDGCHC	6 cut(s)	820, 1573, 1808, 1919, 2228, 2388
Bsp13I	TCCGGA	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	2328
Bsp143I	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
Bsp1720I	GCTNAGC	2 cut(s)	258, 913
BspCNI	CTCAG	4 cut(s)	854, 918, 926, 2253
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	3 cut(s)	1125, 1334, 2054
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	5 cut(s)	1518, 1531, 1559, 2273, 2304
BspT107I	GGYRCC	2 cut(s)	1220, 1568
BsrBI	CCGCTC	1 cut(s)	1814
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	7 cut(s)	1112, 1175, 1412, 1556, 1596, 1610, 1614
BsrGI	TGTACA	1 cut(s)	2328
BsrI	ACTGG	7 cut(s)	505, 735, 1375, 1800, 1859, 2077, 2196
BssAI	RCCGGY	7 cut(s)	1112, 1175, 1412, 1556, 1596, 1610, 1614
BssECI	CCNNGG	7 cut(s)	561, 937, 1038, 1620, 1699, 1931, 2123
BssMI	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
BssNI	GRCGYC	3 cut(s)	741, 1221, 1530
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	562, 1015, 2124, 2305
Bst4CI	ACNGT	7 cut(s)	519, 601, 685, 1691, 1880, 1932, 2215
Bst6I	CTCTTC	4 cut(s)	20, 46, 1064, 1202
BstACI	GRCGYC	3 cut(s)	741, 1221, 1530
BstAUI	TGTACA	1 cut(s)	2328
BstBAI	YACGTR	2 cut(s)	1050, 1631
BstDEI	CTNAG	6 cut(s)	258, 801, 841, 905, 913, 2261
BstDSI	CCRYGG	3 cut(s)	1038, 1620, 1931
BstF5I	GGATG	5 cut(s)	81, 639, 2284, 2298, 2347
BstFNI	CGCG	3 cut(s)	1125, 1334, 2054
BstH2I	RGCGCY	3 cut(s)	1224, 1509, 1767
BstHHI	GCGC	7 cut(s)	1112, 1127, 1223, 1508, 1766, 2032, 2054
BstKTI	GATC	9 cut(s)	238, 274, 324, 1526, 1554, 1719, 1905, 2268, 2299
BstMAI	GTCTC	4 cut(s)	284, 347, 1287, 2276
BstMBI	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
BstMCI	CGRYCG	6 cut(s)	1246, 1338, 1597, 1606, 1615, 1719
BstNI	CCWGG	4 cut(s)	562, 1015, 2124, 2305
BstPAI	GACNNNNGTC	1 cut(s)	1781
BstSCI	CCNGG	8 cut(s)	560, 1013, 1605, 1699, 1799, 1910, 2122, 2303
BstSFI	CTRYAG	1 cut(s)	1297
BstSLI	GKGCMC	3 cut(s)	1573, 2228, 2388
BstUI	CGCG	3 cut(s)	1125, 1334, 2054
BstV2I	GAAGAC	1 cut(s)	1069
BstX2I	RGATCY	3 cut(s)	1523, 2265, 2296
BstXI	CCANNNNNNTGG	1 cut(s)	1795
BstYI	RGATCY	3 cut(s)	1523, 2265, 2296
BstZI	CGGCCG	4 cut(s)	1243, 1335, 1594, 1612
BtgI	CCRYGG	3 cut(s)	1038, 1620, 1931
BtgZI	GCGATG	1 cut(s)	1315
BtsCI	GGATG	5 cut(s)	81, 639, 2284, 2298, 2347
BtsI	GCAGTG	2 cut(s)	1763, 1806
BtsIMutI	CAGTG	7 cut(s)	554, 597, 681, 1763, 1793, 1806, 1852
CaiI	CAGNNNCTG	1 cut(s)	2191
CciNI	GCGGCCGC	1 cut(s)	1335
CfoI	GCGC	7 cut(s)	1112, 1127, 1223, 1508, 1766, 2032, 2054
Cfr10I	RCCGGY	7 cut(s)	1112, 1175, 1412, 1556, 1596, 1610, 1614
Cfr13I	GGNCC	9 cut(s)	564, 1320, 1583, 1608, 1617, 2224, 2225, 2384, 2385
CpoI	CGGWCCG	1 cut(s)	1617
CseI	GACGC	4 cut(s)	302, 730, 1175, 1519
CsiI	ACCWGGT	1 cut(s)	1013
Csp6I	GTAC	6 cut(s)	1387, 1655, 1687, 2110, 2134, 2329
CspI	CGGWCCG	1 cut(s)	1617
CviAII	CATG	9 cut(s)	378, 723, 1084, 1102, 1138, 1147, 1965, 2146, 2309
CviQI	GTAC	6 cut(s)	1387, 1655, 1687, 2110, 2134, 2329
DdeI	CTNAG	6 cut(s)	258, 801, 841, 905, 913, 2261
DinI	GGCGCC	1 cut(s)	1222
DpnI	GATC	9 cut(s)	237, 273, 323, 1525, 1553, 1718, 1904, 2267, 2298
DpnII	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
EaeI	YGGCCR	5 cut(s)	1243, 1335, 1594, 1612, 1797
EagI	CGGCCG	4 cut(s)	1243, 1335, 1594, 1612
Eam1104I	CTCTTC	4 cut(s)	20, 46, 1064, 1202
EarI	CTCTTC	4 cut(s)	20, 46, 1064, 1202
EciI	GGCGGA	2 cut(s)	934, 1054
Ecl136II	GAGCTC	1 cut(s)	818
EclXI	CGGCCG	4 cut(s)	1243, 1335, 1594, 1612
Eco24I	GRGCYC	3 cut(s)	820, 2228, 2388
Eco47I	GGWCC	2 cut(s)	1583, 1617
Eco52I	CGGCCG	4 cut(s)	1243, 1335, 1594, 1612
Eco53kI	GAGCTC	1 cut(s)	818
Eco57I	CTGAAG	3 cut(s)	638, 659, 2273
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	818
EcoO109I	RGGNCCY	1 cut(s)	2384
EcoRII	CCWGG	4 cut(s)	560, 1013, 2122, 2303
EcoT38I	GRGCYC	3 cut(s)	820, 2228, 2388
EgeI	GGCGCC	1 cut(s)	1222
EheI	GGCGCC	1 cut(s)	1222
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	9 cut(s)	381, 726, 1087, 1105, 1141, 1150, 1968, 2149, 2312
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	9 cut(s)	377, 722, 1083, 1101, 1137, 1146, 1964, 2145, 2308
FauI	CCCGC	4 cut(s)	1001, 2036, 2235, 2281
FauNDI	CATATG	1 cut(s)	1539
FokI	GGATG	5 cut(s)	68, 646, 2291, 2305, 2354
FriOI	GRGCYC	3 cut(s)	820, 2228, 2388
FseI	GGCCGGCC	1 cut(s)	1614
FspBI	CTAG	6 cut(s)	417, 896, 1467, 1649, 1865, 2400
GlaI	GCGC	7 cut(s)	1111, 1126, 1222, 1507, 1765, 2031, 2053
GsaI	CCCAGC	2 cut(s)	1465, 2204
HaeII	RGCGCY	3 cut(s)	1224, 1509, 1767
HgaI	GACGC	4 cut(s)	302, 730, 1175, 1519
HhaI	GCGC	7 cut(s)	1112, 1127, 1223, 1508, 1766, 2032, 2054
Hin1I	GRCGYC	3 cut(s)	741, 1221, 1530
Hin1II	CATG	9 cut(s)	381, 726, 1087, 1105, 1141, 1150, 1968, 2149, 2312
Hin6I	GCGC	7 cut(s)	1110, 1125, 1221, 1506, 1764, 2030, 2052
HinP1I	GCGC	7 cut(s)	1110, 1125, 1221, 1506, 1764, 2030, 2052
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	7 cut(s)	167, 173, 440, 715, 899, 1344, 1590
Hpy166II	GTNNAC	6 cut(s)	1020, 1042, 1634, 2101, 2110, 2329
Hpy188I	TCNGA	6 cut(s)	172, 203, 673, 922, 2272, 2301
Hpy188III	TCNNGA	8 cut(s)	245, 281, 341, 712, 1714, 1771, 1831, 1865
Hpy8I	GTNNAC	6 cut(s)	1020, 1042, 1634, 2101, 2110, 2329
Hpy99I	CGWCG	8 cut(s)	406, 1169, 1460, 1535, 1739, 2015, 2089, 2276
HpyCH4III	ACNGT	7 cut(s)	519, 601, 685, 1691, 1880, 1932, 2215
HpyCH4IV	ACGT	4 cut(s)	401, 1049, 1158, 1630
HpyF3I	CTNAG	6 cut(s)	258, 801, 841, 905, 913, 2261
HpySE526I	ACGT	4 cut(s)	401, 1049, 1158, 1630
Hsp92I	GRCGYC	3 cut(s)	741, 1221, 1530
Hsp92II	CATG	9 cut(s)	381, 726, 1087, 1105, 1141, 1150, 1968, 2149, 2312
HspAI	GCGC	7 cut(s)	1110, 1125, 1221, 1506, 1764, 2030, 2052
KasI	GGCGCC	1 cut(s)	1220
Kpn2I	TCCGGA	1 cut(s)	244
KroI	GCCGGC	3 cut(s)	1112, 1175, 1610
KroNI	GCCGGC	3 cut(s)	1114, 1177, 1612
Kzo9I	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
LmnI	GCTCC	8 cut(s)	429, 815, 947, 995, 1121, 1505, 1761, 1803
LweI	GCATC	2 cut(s)	624, 2386
MabI	ACCWGGT	1 cut(s)	1013
MaeI	CTAG	6 cut(s)	417, 896, 1467, 1649, 1865, 2400
MaeII	ACGT	4 cut(s)	401, 1049, 1158, 1630
MaeIII	GTNAC	5 cut(s)	601, 1745, 1783, 2209, 2215
MalI	GATC	9 cut(s)	237, 273, 323, 1525, 1553, 1718, 1904, 2267, 2298
MbiI	CCGCTC	1 cut(s)	1814
MboI	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
MflI	RGATCY	3 cut(s)	1523, 2265, 2296
MhlI	GDGCHC	6 cut(s)	820, 1573, 1808, 1919, 2228, 2388
MluCI	AATT	1 cut(s)	1575
Mly113I	GGCGCC	1 cut(s)	1221
MlyI	GAGTC	2 cut(s)	167, 893
MmeI	TCCRAC	7 cut(s)	46, 135, 195, 226, 945, 1828, 2295
MreI	CGCCGGCG	1 cut(s)	1175
MroI	TCCGGA	1 cut(s)	244
MroNI	GCCGGC	3 cut(s)	1112, 1175, 1610
MroXI	GAANNNNTTC	1 cut(s)	1235
MseI	TTAA	4 cut(s)	102, 362, 1409, 1722
MslI	CAYNNNNRTG	1 cut(s)	1857
MspA1I	CMGCKG	6 cut(s)	909, 1353, 1781, 2035, 2230, 2288
MspR9I	CCNGG	8 cut(s)	562, 1015, 1607, 1701, 1801, 1912, 2124, 2305
MvaI	CCWGG	4 cut(s)	562, 1015, 2124, 2305
MvnI	CGCG	3 cut(s)	1125, 1334, 2054
NaeI	GCCGGC	3 cut(s)	1114, 1177, 1612
NarI	GGCGCC	1 cut(s)	1221
NciI	CCSGG	4 cut(s)	1607, 1701, 1801, 1912
NdeI	CATATG	1 cut(s)	1539
NdeII	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
NgoMIV	GCCGGC	3 cut(s)	1112, 1175, 1610
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	9 cut(s)	381, 726, 1087, 1105, 1141, 1150, 1968, 2149, 2312
NmeAIII	GCCGAG	4 cut(s)	918, 1071, 1390, 1638
NmuCI	GTSAC	4 cut(s)	601, 1783, 2209, 2215
NotI	GCGGCCGC	1 cut(s)	1335
PaeR7I	CTCGAG	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 1599, 1712
PdiI	GCCGGC	3 cut(s)	1114, 1177, 1612
PdmI	GAANNNNTTC	1 cut(s)	1235
PfeI	GAWTC	5 cut(s)	167, 440, 715, 1344, 1590
Pfl23II	CGTACG	1 cut(s)	2133
PflMI	CCANNNNNTGG	1 cut(s)	511
Ple19I	CGATCG	1 cut(s)	1719
PleI	GAGTC	2 cut(s)	167, 893
PluTI	GGCGCC	1 cut(s)	1224
PpsI	GAGTC	2 cut(s)	167, 893
Ppu21I	YACGTR	2 cut(s)	1050, 1631
PshAI	GACNNNNGTC	1 cut(s)	1781
Psp124BI	GAGCTC	1 cut(s)	820
Psp6I	CCWGG	4 cut(s)	560, 1013, 2122, 2303
PspFI	CCCAGC	2 cut(s)	1461, 2200
PspGI	CCWGG	4 cut(s)	560, 1013, 2122, 2303
PspLI	CGTACG	1 cut(s)	2133
PspOMI	GGGCCC	2 cut(s)	2224, 2384
PspPI	GGNCC	9 cut(s)	564, 1320, 1583, 1608, 1617, 2224, 2225, 2384, 2385
PspXI	VCTCGAGB	1 cut(s)	659
PsrI	GAACNNNNNNTAC	4 cut(s)	2093, 2125, 2126, 2158
PstNI	CAGNNNCTG	1 cut(s)	2191
PsuI	RGATCY	3 cut(s)	1523, 2265, 2296
PvuI	CGATCG	1 cut(s)	1719
PvuII	CAGCTG	3 cut(s)	909, 1781, 2035
RigI	GGCCGGCC	1 cut(s)	1614
RsaI	GTAC	6 cut(s)	1388, 1656, 1688, 2111, 2135, 2330
RsaNI	GTAC	6 cut(s)	1387, 1655, 1687, 2110, 2134, 2329
RseI	CAYNNNNRTG	1 cut(s)	1857
Rsr2I	CGGWCCG	1 cut(s)	1617
RsrII	CGGWCCG	1 cut(s)	1617
SacI	GAGCTC	1 cut(s)	820
SaqAI	TTAA	4 cut(s)	102, 362, 1409, 1722
Sau3AI	GATC	9 cut(s)	235, 271, 321, 1523, 1551, 1716, 1902, 2265, 2296
Sau96I	GGNCC	9 cut(s)	564, 1320, 1583, 1608, 1617, 2224, 2225, 2384, 2385
SchI	GAGTC	2 cut(s)	167, 893
ScrFI	CCNGG	8 cut(s)	562, 1015, 1607, 1701, 1801, 1912, 2124, 2305
SduI	GDGCHC	6 cut(s)	820, 1573, 1808, 1919, 2228, 2388
SexAI	ACCWGGT	1 cut(s)	1013
SfaNI	GCATC	2 cut(s)	624, 2386
SfcI	CTRYAG	1 cut(s)	1297
SfiI	GGCCNNNNNGGCC	1 cut(s)	2128
SfoI	GGCGCC	1 cut(s)	1222
Sfr274I	CTCGAG	1 cut(s)	659
SgrAI	CRCCGGYG	1 cut(s)	1175
SinI	GGWCC	2 cut(s)	1583, 1617
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	1857
SmlI	CTYRAG	3 cut(s)	659, 735, 1262
SmoI	CTYRAG	3 cut(s)	659, 735, 1262
Sse9I	AATT	1 cut(s)	1575
SspDI	GGCGCC	1 cut(s)	1220
SspMI	CTAG	6 cut(s)	417, 896, 1467, 1649, 1865, 2400
SstI	GAGCTC	1 cut(s)	820
StyD4I	CCNGG	8 cut(s)	560, 1013, 1605, 1699, 1799, 1910, 2122, 2303
TaaI	ACNGT	7 cut(s)	519, 601, 685, 1691, 1880, 1932, 2215
TaiI	ACGT	4 cut(s)	404, 1052, 1161, 1633
TaqI	TCGA	5 cut(s)	282, 660, 1164, 1229, 1602
TaqII	GACCGA	1 cut(s)	1600
TasI	AATT	1 cut(s)	1575
TatI	WGTACW	3 cut(s)	1654, 2109, 2328
TfiI	GAWTC	5 cut(s)	167, 440, 715, 1344, 1590
Tru1I	TTAA	4 cut(s)	102, 362, 1409, 1722
Tru9I	TTAA	4 cut(s)	102, 362, 1409, 1722
TscAI	CASTG	7 cut(s)	561, 604, 688, 1763, 1800, 1813, 1859
TseFI	GTSAC	4 cut(s)	601, 1783, 2209, 2215
Tsp45I	GTSAC	4 cut(s)	601, 1783, 2209, 2215
TspDTI	ATGAA	8 cut(s)	639, 711, 753, 1154, 1228, 1392, 2134, 2234
TspGWI	ACGGA	4 cut(s)	56, 1108, 1609, 2102
TspRI	CASTG	7 cut(s)	561, 604, 688, 1763, 1800, 1813, 1859
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	1583, 1617
XbaI	TCTAGA	1 cut(s)	1864
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1036, 1544
XhoI	CTCGAG	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	1235
XspI	CTAG	6 cut(s)	417, 896, 1467, 1649, 1865, 2400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.