Rw4G007950

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0024965
Physical Location & Seq
Forward (+)
17030280 .. 17031360
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007950.1

Sequence Viewer

Length: 402 bp
ATGAAATCCCTTACTACTTTCGACTTTCAAGTACCTCGTCCAAATTCCACTCTAAATGAATTTCTTGTTTGTATGTTGCTGAAGAGACCTACAGAGCGGGGATTGTTGGTTCTGGAAATGTTATGTTTTTTCGTTTTGGTTTGCTTATGGTGGTTGTTGTTTTATAATTTTTTTTTTTTTAAATGCTTACGTTGGATGTTATGTGTGGTAGAAAGTGTTGCAGACTCTGAAAGCCAAGAAATGGGGATGTTCACAGGGATGTTGATGAGAGGACAGCCACTGACAACGAAGCTGGCAAAATGGGCTACATATGGTGTTTTCCCTGCAGCCATGGCCGCCGCCGTCATCTATTCCCCTCCCAGTTACACCTATTCCAAGGACAGTCCTAAGTCCACCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

133

Amino Acids

15.35

Weight (kDa)

8.87

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024965)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0399731
rosa_samantha Rh4CG105100
rosa_wichuraiana Rw4G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 3 cut(s) 97, 336, 339
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 2 cut(s) 43, 59
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 79
AlwNI CAGNNNCTG 2 cut(s) 227, 280
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 43, 59
BbvI GCAGC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 90, 324
BisI GCNGC 3 cut(s) 327, 336, 339
BlsI GCNGC 3 cut(s) 328, 337, 340
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 330, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 330, 375
BseGI GGATG 3 cut(s) 201, 252, 264
BseLI CCNNNNNNNGG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 3 cut(s) 97, 336, 339
BspANI GGCC 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 330, 375
BssT1I CCWWGG 2 cut(s) 330, 375
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 3 cut(s) 201, 252, 264
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 3 cut(s) 302, 332, 335
BstSFI CTRYAG 2 cut(s) 90, 324
BstV1I GCAGC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 3 cut(s) 201, 252, 264
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 2 cut(s) 227, 280
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 331
CviJI RGCY 6 cut(s) 234, 277, 292, 305, 329, 335
CviKI_1 RGCY 6 cut(s) 234, 277, 292, 305, 329, 335
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 387
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 330, 375
Eco31I GGTCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 330, 375
ErhI CCWWGG 2 cut(s) 330, 375
FaeI CATG 1 cut(s) 334
FaiI YATR 8 cut(s) 74, 124, 148, 165, 202, 310, 312, 332
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 3 cut(s) 327, 336, 339
FokI GGATG 3 cut(s) 208, 259, 271
Fsp4HI GCNGC 3 cut(s) 327, 336, 339
GluI GCNGC 3 cut(s) 327, 336, 339
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 1 cut(s) 334
HinfI GANTC 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 252, 393
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 252, 393
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 221, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 332, 335
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 334
LpnPI CCDG 5 cut(s) 98, 240, 278, 336, 373
Lsp1109I GCAGC 1 cut(s) 338
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 97
MboII GAAGA 1 cut(s) 94
MluCI AATT 3 cut(s) 43, 59, 166
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 45, 263, 366
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 302, 332, 335
NcoI CCATGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 310
NlaIII CATG 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 3 cut(s) 328, 337, 340
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PsiI TTATAA 1 cut(s) 165
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 2 cut(s) 227, 280
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 327, 336, 339
SchI GAGTC 1 cut(s) 218
SetI ASST 5 cut(s) 37, 91, 193, 294, 371
SfcI CTRYAG 2 cut(s) 90, 324
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 3 cut(s) 43, 59, 166
SsiI CCGC 3 cut(s) 97, 336, 339
StyI CCWWGG 2 cut(s) 330, 375
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 43, 59, 166
TauI GCSGC 2 cut(s) 338, 341
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 17, 72
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 241
XapI RAATTY 2 cut(s) 43, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.