Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0031370

Physical Location & Seq

Genomic Coordinates Forward (+)

61039747 .. 61040287

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTGCTGGAGTATCATCACCCAACTTTTCTGCACCAGCTCCATGGCAGAAAGAAATATTATGCCAGCTAAATTTAGACGGGGAGGCTCCTTTTCTCAAGGTATGCTTAGGGGGTTCAGAGTTGGAGGGACGACTGTTGGCAGCCTTGAGAGTTGTTCTTGCCAGTGACGTAGAAGCAGTGCAGAAGCATGATTTAATTACACTTAAATCTATATCAGTTATTGCAAATGAGGTAGCTGCTTATCGCACCATTATTGCACTATGTGTGATTGCACTCGGACGCTTCCCAACTAAAATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0003824 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018026 GO:0018027 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0046975 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

101

Amino Acids

10.75

Weight (kDa)

6.55

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	12 - 100	1.8e-07	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031370)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006478.1_g000006
rosa_wichuraiana	Rw4G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	73
AdeI	CACNNNGTG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	41, 70, 239
AluI	AGCT	3 cut(s)	41, 70, 239
ApeKI	GCWGC	3 cut(s)	5, 143, 239
ApoI	RAATTY	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	155, 226
BisI	GCNGC	3 cut(s)	6, 144, 240
BlsI	GCNGC	3 cut(s)	7, 145, 241
BmiI	GGNNCC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	83, 169
BsaJI	CCNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	155, 226
BsgI	GTGCAG	2 cut(s)	18, 203
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	155, 226
BstXI	CCANNNNNNTGG	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	172, 186
Cac8I	GCNNGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	291
CviAII	CATG	3 cut(s)	45, 191, 301
CviJI	RGCY	6 cut(s)	5, 41, 70, 89, 146, 239
CviKI_1	RGCY	6 cut(s)	5, 41, 70, 89, 146, 239
DdeI	CTNAG	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	48, 194, 304
FaiI	YATR	7 cut(s)	46, 64, 106, 192, 215, 265, 302
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	44, 190, 300
Fnu4HI	GCNGC	3 cut(s)	6, 144, 240
Fsp4HI	GCNGC	3 cut(s)	6, 144, 240
GluI	GCNGC	3 cut(s)	6, 144, 240
GsuI	CTGGAG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	48, 194, 304
HphI	GGTGA	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	121, 281
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	35, 184, 227, 260, 275
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	48, 194, 304
LmnI	GCTCC	2 cut(s)	46, 94
LpnPI	CCDG	3 cut(s)	51, 80, 178
Lsp1109I	GCAGC	2 cut(s)	155, 226
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	167
MluCI	AATT	2 cut(s)	73, 198
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	79, 121, 226
MseI	TTAA	2 cut(s)	197, 207
NcoI	CCATGG	1 cut(s)	44
NlaIII	CATG	3 cut(s)	48, 194, 304
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	7, 145, 241
PspN4I	GGNNCC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	197, 207
SatI	GCNGC	3 cut(s)	6, 144, 240
SetI	ASST	6 cut(s)	43, 72, 105, 174, 237, 241
SmlI	CTYRAG	2 cut(s)	98, 148
SmoI	CTYRAG	2 cut(s)	98, 148
Sse9I	AATT	2 cut(s)	73, 198
SspI	AATATT	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	174
TasI	AATT	2 cut(s)	73, 198
Tru1I	TTAA	2 cut(s)	197, 207
Tru9I	TTAA	2 cut(s)	197, 207
TscAI	CASTG	2 cut(s)	172, 186
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	5, 143, 239
Tsp45I	GTSAC	1 cut(s)	167
TspRI	CASTG	2 cut(s)	172, 186
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.