Nucleolar pre-ribosomal-associated protein 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0039541 |
| rosa_samantha | Rh5BG268600 Rh5BG271400 |
| rosa_wichuraiana | Rw5G024690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 157 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 248, 307 |
| AciI | CCGC | 1 cut(s) | 128 |
| AclWI | GGATC | 2 cut(s) | 268, 281 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 248, 307 |
| AgsI | TTSAA | 2 cut(s) | 82, 351 |
| AleI | CACNNNNGTG | 1 cut(s) | 204 |
| AluBI | AGCT | 2 cut(s) | 87, 232 |
| AluI | AGCT | 2 cut(s) | 87, 232 |
| AlwI | GGATC | 2 cut(s) | 268, 281 |
| AoxI | GGCC | 1 cut(s) | 27 |
| AspS9I | GGNCC | 1 cut(s) | 27 |
| BamHI | GGATCC | 1 cut(s) | 273 |
| BauI | CACGAG | 1 cut(s) | 243 |
| BccI | CCATC | 3 cut(s) | 123, 242, 301 |
| BclI | TGATCA | 1 cut(s) | 258 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BfuAI | ACCTGC | 1 cut(s) | 157 |
| BglII | AGATCT | 1 cut(s) | 53 |
| BisI | GCNGC | 1 cut(s) | 128 |
| BlsI | GCNGC | 1 cut(s) | 129 |
| BmgT120I | GGNCC | 1 cut(s) | 27 |
| BmiI | GGNNCC | 2 cut(s) | 28, 275 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 265 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 248, 307 |
| BseDI | CCNNGG | 1 cut(s) | 265 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 248, 307 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 248, 307 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp143I | GATC | 3 cut(s) | 53, 258, 273 |
| Bsp19I | CCATGG | 1 cut(s) | 265 |
| BspACI | CCGC | 1 cut(s) | 128 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspLI | GGNNCC | 2 cut(s) | 28, 275 |
| BspMI | ACCTGC | 1 cut(s) | 157 |
| BspPI | GGATC | 2 cut(s) | 268, 281 |
| BssECI | CCNNGG | 1 cut(s) | 265 |
| BssMI | GATC | 3 cut(s) | 53, 258, 273 |
| BssSI | CACGAG | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 1 cut(s) | 265 |
| Bst2BI | CACGAG | 1 cut(s) | 243 |
| BstDEI | CTNAG | 1 cut(s) | 133 |
| BstDSI | CCRYGG | 1 cut(s) | 265 |
| BstKTI | GATC | 3 cut(s) | 56, 261, 276 |
| BstMBI | GATC | 3 cut(s) | 53, 258, 273 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 238 |
| BstNSI | RCATGY | 1 cut(s) | 17 |
| BstX2I | RGATCY | 2 cut(s) | 53, 273 |
| BstYI | RGATCY | 2 cut(s) | 53, 273 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 1 cut(s) | 265 |
| BtsI | GCAGTG | 1 cut(s) | 122 |
| BtsIMutI | CAGTG | 2 cut(s) | 122, 291 |
| BveI | ACCTGC | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 1 cut(s) | 27 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 32 |
| CviAII | CATG | 3 cut(s) | 14, 178, 266 |
| CviJI | RGCY | 4 cut(s) | 29, 87, 232, 264 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 87, 232, 264 |
| DdeI | CTNAG | 1 cut(s) | 133 |
| DpnI | GATC | 3 cut(s) | 55, 260, 275 |
| DpnII | GATC | 3 cut(s) | 53, 258, 273 |
| Eco130I | CCWWGG | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 1 cut(s) | 265 |
| ErhI | CCWWGG | 1 cut(s) | 265 |
| FaeI | CATG | 3 cut(s) | 17, 181, 269 |
| FaiI | YATR | 6 cut(s) | 15, 41, 164, 179, 267, 344 |
| FatI | CATG | 3 cut(s) | 13, 177, 265 |
| FbaI | TGATCA | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 1 cut(s) | 128 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GluI | GCNGC | 1 cut(s) | 128 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| Hin1II | CATG | 3 cut(s) | 17, 181, 269 |
| HinfI | GANTC | 2 cut(s) | 296, 329 |
| Hpy188I | TCNGA | 1 cut(s) | 278 |
| Hpy188III | TCNNGA | 1 cut(s) | 92 |
| HpyAV | CCTTC | 2 cut(s) | 88, 264 |
| HpyCH4IV | ACGT | 1 cut(s) | 216 |
| HpyCH4V | TGCA | 2 cut(s) | 166, 177 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 238 |
| HpyF3I | CTNAG | 1 cut(s) | 133 |
| HpySE526I | ACGT | 1 cut(s) | 216 |
| Hsp92II | CATG | 3 cut(s) | 17, 181, 269 |
| Ksp22I | TGATCA | 1 cut(s) | 258 |
| Kzo9I | GATC | 3 cut(s) | 53, 258, 273 |
| LpnPI | CCDG | 5 cut(s) | 77, 152, 203, 251, 314 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeII | ACGT | 1 cut(s) | 216 |
| MaeIII | GTNAC | 2 cut(s) | 120, 289 |
| MalI | GATC | 3 cut(s) | 55, 260, 275 |
| MboI | GATC | 3 cut(s) | 53, 258, 273 |
| MboII | GAAGA | 2 cut(s) | 222, 316 |
| MflI | RGATCY | 2 cut(s) | 53, 273 |
| MluCI | AATT | 2 cut(s) | 68, 99 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MnlI | CCTC | 2 cut(s) | 165, 304 |
| MseI | TTAA | 1 cut(s) | 48 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 204 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 238 |
| NcoI | CCATGG | 1 cut(s) | 265 |
| NdeII | GATC | 3 cut(s) | 53, 258, 273 |
| NlaIII | CATG | 3 cut(s) | 17, 181, 269 |
| NlaIV | GGNNCC | 2 cut(s) | 28, 275 |
| NmuCI | GTSAC | 2 cut(s) | 120, 289 |
| NspI | RCATGY | 1 cut(s) | 17 |
| OliI | CACNNNNGTG | 1 cut(s) | 204 |
| PfeI | GAWTC | 2 cut(s) | 296, 329 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 248, 307 |
| PkrI | GCNGC | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 28, 275 |
| PspPI | GGNCC | 1 cut(s) | 27 |
| PsuI | RGATCY | 2 cut(s) | 53, 273 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 204 |
| SaqAI | TTAA | 1 cut(s) | 48 |
| SatI | GCNGC | 1 cut(s) | 128 |
| Sau3AI | GATC | 3 cut(s) | 53, 258, 273 |
| Sau96I | GGNCC | 1 cut(s) | 27 |
| SetI | ASST | 6 cut(s) | 80, 89, 171, 192, 219, 234 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 204 |
| Sse9I | AATT | 2 cut(s) | 68, 99 |
| SsiI | CCGC | 1 cut(s) | 128 |
| SspMI | CTAG | 1 cut(s) | 359 |
| StyI | CCWWGG | 1 cut(s) | 265 |
| TaiI | ACGT | 1 cut(s) | 219 |
| TasI | AATT | 2 cut(s) | 68, 99 |
| TauI | GCSGC | 1 cut(s) | 130 |
| TfiI | GAWTC | 2 cut(s) | 296, 329 |
| Tru1I | TTAA | 1 cut(s) | 48 |
| Tru9I | TTAA | 1 cut(s) | 48 |
| TscAI | CASTG | 2 cut(s) | 129, 298 |
| TseFI | GTSAC | 2 cut(s) | 120, 289 |
| Tsp45I | GTSAC | 2 cut(s) | 120, 289 |
| TspDTI | ATGAA | 2 cut(s) | 200, 242 |
| TspGWI | ACGGA | 1 cut(s) | 50 |
| TspRI | CASTG | 2 cut(s) | 129, 298 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 248, 307 |
| XceI | RCATGY | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 359 |