Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0030071

Physical Location & Seq

Genomic Coordinates Reverse (-)

10324954 .. 10325998

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTCGAGAAGTAGGAAGCTTTCTAGTACACTTCTTTGAAATCGTTCCTGCTCGGCGCTCGAGCTTCGGCGAATTCGTTTTTGGCCGGTTACAAGCCTCTGATCTAGTTTCAATGCCTCTGATTGGACTCTTCGTTGCGTCGACGCTTCAATCGGTGCTTAGTGTTGTGCAGGAGAAGGGAGTCAAGGCTACTCTGTTAGGCCTGTTCATGAGCTTCATCAAGCTGGTTCCTGGAGTGAAGAAGTACATAGACGGAGAGAAGCAAAAGGTGGTGGATAATTTCAGTCTGGTGGTAACTCTAAGAGAGAAAATTGGAGAACTGAATTGCCTGGCGCGGGGTTGGGAGCGGGAGTTCTGGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016020 GO:0016042 GO:0030149 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046466 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

9.74

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030071)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396231
rosa_wichuraiana	Rw6G006460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	376, 388
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	2 cut(s)	69, 287
AfiI	CCNNNNNNNGG	2 cut(s)	164, 376
AgsI	TTSAA	3 cut(s)	80, 153, 191
AjnI	CCWGG	3 cut(s)	29, 271, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AloI	GAACNNNNNNTCC	1 cut(s)	377
AluBI	AGCT	4 cut(s)	60, 105, 255, 265
AluI	AGCT	4 cut(s)	60, 105, 255, 265
Ama87I	CYCGRG	1 cut(s)	100
AoxI	GGCC	2 cut(s)	124, 241
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	99, 376
AsuHPI	GGTGA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	100
BciT130I	CCWGG	3 cut(s)	31, 273, 371
BfaI	CTAG	2 cut(s)	65, 146
BfoI	RGCGCY	1 cut(s)	100
Bme1390I	CCNGG	3 cut(s)	31, 273, 371
BmeT110I	CYCGRG	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	3 cut(s)	31, 273, 371
BpmI	CTGGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 376
Bse118I	RCCGGY	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	31, 273, 371
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	164, 376
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	2 cut(s)	126, 243
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	164, 376
BsnI	GGCC	2 cut(s)	126, 243
BsoBI	CYCGRG	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	376, 388
BspANI	GGCC	2 cut(s)	126, 243
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	31, 273, 371
Bst6I	CTCTTC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	200, 341
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 376
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	3 cut(s)	31, 273, 371
BstSCI	CCNGG	3 cut(s)	29, 271, 369
BstUI	CGCG	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	126, 243
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	2 cut(s)	99, 376
Cfr10I	RCCGGY	1 cut(s)	126
CseI	GACGC	2 cut(s)	168, 193
Csp6I	GTAC	2 cut(s)	68, 286
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	60, 105, 126, 137, 230, 243, 255, 265
CviKI_1	RGCY	8 cut(s)	60, 105, 126, 137, 230, 243, 255, 265
CviQI	GTAC	2 cut(s)	68, 286
DdeI	CTNAG	2 cut(s)	200, 341
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	29, 271, 369
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	251, 290
FatI	CATG	1 cut(s)	249
FauI	CCCGC	2 cut(s)	369, 381
FblI	GTMKAC	1 cut(s)	182
FspBI	CTAG	2 cut(s)	65, 146
GlaI	GCGC	2 cut(s)	98, 375
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	126, 243
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	2 cut(s)	168, 193
HhaI	GCGC	2 cut(s)	99, 376
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	2 cut(s)	97, 374
HinP1I	GCGC	2 cut(s)	97, 374
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	168, 222
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	70, 183
Hpy188I	TCNGA	2 cut(s)	142, 162
Hpy188III	TCNNGA	3 cut(s)	47, 250, 397
Hpy8I	GTNNAC	2 cut(s)	70, 183
Hpy99I	CGWCG	2 cut(s)	184, 187
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	19, 211
HpyF3I	CTNAG	2 cut(s)	200, 341
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	2 cut(s)	97, 374
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	65, 146
MaeIII	GTNAC	3 cut(s)	36, 129, 334
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	163, 292
MluCI	AATT	4 cut(s)	113, 319, 351, 364
MlyI	GAGTC	2 cut(s)	162, 231
MnlI	CCTC	2 cut(s)	148, 168
MroXI	GAANNNNTTC	1 cut(s)	84
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	3 cut(s)	31, 273, 371
MvaI	CCWGG	3 cut(s)	31, 273, 371
MvnI	CGCG	1 cut(s)	376
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	271
PleI	GAGTC	2 cut(s)	162, 230
PpsI	GAGTC	2 cut(s)	162, 230
Psp6I	CCWGG	3 cut(s)	29, 271, 369
PspGI	CCWGG	3 cut(s)	29, 271, 369
PspN4I	GGNNCC	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	100
RsaI	GTAC	2 cut(s)	69, 287
RsaNI	GTAC	2 cut(s)	68, 286
SalI	GTCGAC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	162, 231
ScrFI	CCNGG	3 cut(s)	31, 273, 371
SetI	ASST	6 cut(s)	15, 62, 107, 257, 267, 312
Sfr274I	CTCGAG	1 cut(s)	100
SgrDI	CGTCGACG	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	4 cut(s)	113, 319, 351, 364
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	2 cut(s)	376, 388
SspMI	CTAG	2 cut(s)	65, 146
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	29, 271, 369
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	3 cut(s)	46, 101, 182
TasI	AATT	4 cut(s)	113, 319, 351, 364
TatI	WGTACW	2 cut(s)	67, 285
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	238, 247
TspGWI	ACGGA	1 cut(s)	309
XapI	RAATTY	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	2 cut(s)	65, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.