AT1G03440

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015147
Physical Location & Seq
Forward (+)
852151 .. 854297
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03440.1

Sequence Viewer

Length: 1194 bp
ATGATGATGAGATTTACCAAGTTGGTTTGGTGTTTGATGTTCCTGCTTCGATTCGGCTTCTTCACGGAGGCGATTCTCGACCCAGTTGATTTCTTGGCTCTGCAAGCTATTCGTAAATCCCTCGATGACTTGCCAGGTTCCAAGTTCTTCGAGTCTTGGGATTTCACTTCTGATCCATGCGGCTTCGCTGGCGTCTACTGCAACGGAGATAAAGTAATCTCTCTCAATCTCGGCGATCCTAGAGCCGGTTCACCCGGTTTATCGGGTCGGATCGACCCAGCAATAGGCAAACTCTCTGCACTCACTGAGCTCTCCATTGTCCCCGGCAGAATCATGGGTGCGTTACCGGCAACAATCTCTCAGCTAAAAGACCTTCGTTTTCTCGCAATCAGCCGGAATTTCATCTCCGGCGAGATTCCGGCGAGTCTCGGCGAGGTTCGTGGTCTCAGAACACTGGATTTAAGCTATAATCAATTAACCGGAACTATCTCTCCGTCAATCGGATCGTTACCGGAGCTCTCCAATTTGATTCTCTGCCACAACCACTTAACCGGATCAATACCACCGTTTCTCTCACAAACTCTAACCCGAATCGATCTCAAACGCAACAGCCTCACCGGCTCAATCTCACCGGCGTCTCTCCCTCCGTCGCTTCAATACCTCTCACTCGCTTGGAACCAGTTAACCGGATCGGTATACCATGTTTTACTCCGGTTGAACCAGCTTAACTACCTTGATCTCAGCTTAAACCGGTTCACCGGTACAATCCCCGCTCGAGTCTTCGCCTTCCCGATCACAAATCTTCAGTTACAACGCAATTTCTTCTTCGGTTTAATTCAGCCGGCGAATCAAGTGACGATCTCCACCGTCGATCTCAGCTACAATCGATTCTCCGGTGGGATATCTCCGCTTCTCTCAAGCGTTGAGAATCTCTACTTAAACAGCAATCGTTTCACCGGTGAAGTCCCGGCGAGTTTCGTGGAGAGGTTGTTATCGGCGAACATACAGACTCTGTATCTACAGCATAATTTCTTGACGGGAATACAGATTAGCCCGGCGGCGGAAATCCCGGTGAGCAGCTCGCTGTGTCTGCAGTATAACTGTATGGTGCCGCCGTTACAAACCCCGTGTCCGCTAAAGGCCGGCCCACAAAAGACTAGGCCCACTACACAATGCACCGAGTGGCGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009798 GO:0009888 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010087 GO:0010103 GO:0010148 GO:0010229 GO:0010286 GO:0010374 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022603 GO:0023052 GO:0030155 GO:0032501 GO:0032502 GO:0033218 GO:0033554 GO:0033612 GO:0034605 GO:0036211 GO:0038023 GO:0040008 GO:0042044 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048281 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0061458 GO:0065001 GO:0065007 GO:0070370 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905421 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

397

Amino Acids

43.59

Weight (kDa)

8.78

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 68 8e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 94 - 257 2.4e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03440
fragaria_vesca FvH4_2g24330
malus_domestica MD03G1273000.v1.1 MD11G1294000.v1.1
prunus_persica Prupe.8G249500_v2.0.a1
pyrus_communis pycom03g21750 pycom11g26010
rosa_chinensis RchiOBHm_Chr6g0292211
rosa_laevigata RLG00000012053
rosa_roxburghii Rroxscaffold_7G00175360
rosa_rugosa Rorug06G0224500
rosa_samantha Rh6AG337500 Rh6BG344800 Rh6CG351900 Rh6DG337800
rosa_wichuraiana Rw6G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1108
AccBSI CCGCTC 1 cut(s) 773
AccI GTMKAC 2 cut(s) 195, 696
AciI CCGC 7 cut(s) 180, 771, 908, 1058, 1061, 1112, 1133
AclWI GGATC 6 cut(s) 167, 230, 278, 511, 562, 697
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 788
AcyI GRCGYC 2 cut(s) 192, 635
AdeI CACNNNGTG 1 cut(s) 1182
AfaI GTAC 1 cut(s) 763
AfiI CCNNNNNNNGG 4 cut(s) 245, 284, 500, 1060
AgeI ACCGGT 3 cut(s) 750, 758, 956
AgsI TTSAA 2 cut(s) 656, 718
AjnI CCWGG 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 475, 507
AluBI AGCT 9 cut(s) 107, 310, 364, 465, 517, 724, 744, 879, 1080
AluI AGCT 9 cut(s) 107, 310, 364, 465, 517, 724, 744, 879, 1080
Alw21I GWGCWC 2 cut(s) 312, 519
Alw26I GTCTC 3 cut(s) 431, 449, 642
AlwI GGATC 6 cut(s) 167, 230, 278, 511, 562, 697
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 3 cut(s) 1140, 1144, 1160
ApeKI GCWGC 1 cut(s) 1077
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 1114, 1146
AsiGI ACCGGT 3 cut(s) 750, 758, 956
AspS9I GGNCC 2 cut(s) 1145, 1161
AsuC2I CCSGG 5 cut(s) 255, 324, 968, 1055, 1070
AsuHPI GGTGA 7 cut(s) 243, 607, 621, 748, 946, 971, 1084
AvaI CYCGRG 1 cut(s) 774
BanI GGYRCC 1 cut(s) 1108
BanII GRGCYC 2 cut(s) 312, 519
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 2 cut(s) 312, 519
BbvI GCAGC 1 cut(s) 1089
BceAI ACGGC 1 cut(s) 1099
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 135
BcnI CCSGG 5 cut(s) 255, 324, 968, 1055, 1070
BcoDI GTCTC 3 cut(s) 431, 449, 642
BfaI CTAG 2 cut(s) 240, 1158
BfmI CTRYAG 2 cut(s) 1019, 1091
BglI GCCNNNNNGGC 1 cut(s) 618
BisI GCNGC 4 cut(s) 181, 1059, 1078, 1112
BlsI GCNGC 4 cut(s) 182, 1060, 1079, 1113
Bme1390I CCNGG 6 cut(s) 135, 255, 324, 968, 1055, 1070
BmeT110I CYCGRG 1 cut(s) 774
BmgT120I GGNCC 2 cut(s) 1145, 1161
BmiI GGNNCC 3 cut(s) 139, 677, 1110
BmrFI CCNGG 6 cut(s) 135, 255, 324, 968, 1055, 1070
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 772
BpuEI CTTGAG 1 cut(s) 901
BpuMI CCSGG 5 cut(s) 255, 324, 968, 1055, 1070
Bsa29I ATCGAT 2 cut(s) 594, 886
BsaHI GRCGYC 2 cut(s) 192, 635
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 322
BsaWI WCCGGW 9 cut(s) 479, 511, 551, 686, 711, 750, 758, 893, 956
BsaXI ACNNNNNCTCC 6 cut(s) 198, 228, 475, 505, 974, 1004
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 284, 500, 1060
Bse118I RCCGGY 9 cut(s) 245, 346, 617, 631, 750, 758, 841, 956, 1142
Bse1I ACTGG 3 cut(s) 83, 459, 679
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 2 cut(s) 594, 886
BseDI CCNNGG 1 cut(s) 322
BseLI CCNNNNNNNGG 4 cut(s) 245, 284, 500, 1060
BseMII CTCAG 5 cut(s) 297, 374, 460, 754, 889
BseNI ACTGG 3 cut(s) 83, 459, 679
BseXI GCAGC 1 cut(s) 1089
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 3 cut(s) 1142, 1146, 1162
BshNI GGYRCC 1 cut(s) 1108
BshTI ACCGGT 3 cut(s) 750, 758, 956
BshVI ATCGAT 2 cut(s) 594, 886
BsiHKAI GWGCWC 2 cut(s) 312, 519
BsiHKCI CYCGRG 1 cut(s) 774
BslFI GGGAC 2 cut(s) 305, 950
BslI CCNNNNNNNGG 4 cut(s) 245, 284, 500, 1060
BsmAI GTCTC 3 cut(s) 431, 449, 642
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 305, 950
BsnI GGCC 3 cut(s) 1142, 1146, 1162
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 774
Bsp1286I GDGCHC 2 cut(s) 312, 519
BspACI CCGC 7 cut(s) 180, 771, 908, 1058, 1061, 1112, 1133
BspANI GGCC 3 cut(s) 1142, 1146, 1162
BspCNI CTCAG 5 cut(s) 298, 373, 459, 753, 888
BspDI ATCGAT 2 cut(s) 594, 886
BspLI GGNNCC 3 cut(s) 139, 677, 1110
BspMAI CTGCAG 1 cut(s) 1095
BspPI GGATC 6 cut(s) 167, 230, 278, 511, 562, 697
BspT107I GGYRCC 1 cut(s) 1108
BspTNI GGTCTC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 773
BsrFI RCCGGY 9 cut(s) 245, 346, 617, 631, 750, 758, 841, 956, 1142
BsrI ACTGG 3 cut(s) 83, 459, 679
BssAI RCCGGY 9 cut(s) 245, 346, 617, 631, 750, 758, 841, 956, 1142
BssECI CCNNGG 1 cut(s) 322
BssNAI GTATAC 1 cut(s) 697
BssNI GRCGYC 2 cut(s) 192, 635
Bst1107I GTATAC 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 3 cut(s) 567, 868, 1103
BstACI GRCGYC 2 cut(s) 192, 635
BstC8I GCNNGC 5 cut(s) 105, 190, 843, 1082, 1144
BstDEI CTNAG 5 cut(s) 306, 360, 446, 740, 875
BstMAI GTCTC 3 cut(s) 431, 449, 642
BstMWI GCNNNNNNNGC 6 cut(s) 104, 189, 198, 347, 618, 1090
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 6 cut(s) 133, 253, 322, 966, 1053, 1068
BstSFI CTRYAG 2 cut(s) 1019, 1091
BstV1I GCAGC 1 cut(s) 1089
BstV2I GAAGAC 1 cut(s) 772
BstZ17I GTATAC 1 cut(s) 697
Bsu15I ATCGAT 2 cut(s) 594, 886
BsuRI GGCC 3 cut(s) 1142, 1146, 1162
BsuTUI ATCGAT 2 cut(s) 594, 886
BtsIMutI CAGTG 2 cut(s) 303, 452
Cac8I GCNNGC 5 cut(s) 105, 190, 843, 1082, 1144
CaiI CAGNNNCTG 1 cut(s) 1012
Cfr10I RCCGGY 9 cut(s) 245, 346, 617, 631, 750, 758, 841, 956, 1142
Cfr13I GGNCC 2 cut(s) 1145, 1161
ClaI ATCGAT 2 cut(s) 594, 886
CseI GACGC 2 cut(s) 181, 624
Csp6I GTAC 1 cut(s) 762
CspAI ACCGGT 3 cut(s) 750, 758, 956
CviAII CATG 3 cut(s) 177, 334, 701
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 5 cut(s) 306, 360, 446, 740, 875
DraIII CACNNNGTG 1 cut(s) 1182
EciI GGCGGA 1 cut(s) 1076
Ecl136II GAGCTC 2 cut(s) 310, 517
Eco24I GRGCYC 2 cut(s) 312, 519
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 903
Eco53kI GAGCTC 2 cut(s) 310, 517
Eco57I CTGAAG 1 cut(s) 788
Eco88I CYCGRG 1 cut(s) 774
EcoICRI GAGCTC 2 cut(s) 310, 517
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 903
EcoT38I GRGCYC 2 cut(s) 312, 519
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 3 cut(s) 180, 337, 704
FaiI YATR 9 cut(s) 178, 335, 468, 697, 702, 1004, 1026, 1098, 1106
FaqI GGGAC 2 cut(s) 305, 950
FatI CATG 3 cut(s) 176, 333, 700
FauI CCCGC 1 cut(s) 778
FblI GTMKAC 2 cut(s) 195, 696
Fnu4HI GCNGC 4 cut(s) 181, 1059, 1078, 1112
FriOI GRGCYC 2 cut(s) 312, 519
FseI GGCCGGCC 1 cut(s) 1146
Fsp4HI GCNGC 4 cut(s) 181, 1059, 1078, 1112
FspBI CTAG 2 cut(s) 240, 1158
GluI GCNGC 4 cut(s) 181, 1059, 1078, 1112
GsaI CCCAGC 1 cut(s) 281
HaeIII GGCC 3 cut(s) 1142, 1146, 1162
HgaI GACGC 2 cut(s) 181, 624
Hin1I GRCGYC 2 cut(s) 192, 635
Hin1II CATG 3 cut(s) 180, 337, 704
HincII GTYRAC 1 cut(s) 684
HindII GTYRAC 1 cut(s) 684
HpaI GTTAAC 1 cut(s) 684
HphI GGTGA 7 cut(s) 243, 607, 621, 748, 946, 971, 1084
Hpy166II GTNNAC 5 cut(s) 196, 251, 684, 697, 756
Hpy188I TCNGA 4 cut(s) 172, 270, 449, 503
Hpy188III TCNNGA 3 cut(s) 77, 790, 1033
Hpy8I GTNNAC 5 cut(s) 196, 251, 684, 697, 756
Hpy99I CGWCG 2 cut(s) 652, 872
HpyAV CCTTC 2 cut(s) 383, 796
HpyCH4III ACNGT 3 cut(s) 567, 868, 1103
HpyCH4V TGCA 5 cut(s) 103, 201, 299, 1093, 1176
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 189, 198, 347, 618, 1090
HpyF3I CTNAG 5 cut(s) 306, 360, 446, 740, 875
Hsp92I GRCGYC 2 cut(s) 192, 635
Hsp92II CATG 3 cut(s) 180, 337, 704
KroI GCCGGC 2 cut(s) 841, 1142
KroNI GCCGGC 2 cut(s) 843, 1144
KspAI GTTAAC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 1089
MaeI CTAG 2 cut(s) 240, 1158
MaeIII GTNAC 5 cut(s) 342, 507, 807, 853, 1116
MbiI CCGCTC 1 cut(s) 773
MboII GAAGA 6 cut(s) 52, 139, 772, 794, 814, 817
MhlI GDGCHC 2 cut(s) 312, 519
MluCI AATT 6 cut(s) 397, 473, 523, 817, 834, 1027
MlyI GAGTC 4 cut(s) 161, 433, 786, 1003
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 8 cut(s) 61, 131, 427, 623, 654, 671, 978, 1181
MroNI GCCGGC 2 cut(s) 841, 1142
MseI TTAA 8 cut(s) 461, 476, 548, 683, 726, 746, 833, 938
MspR9I CCNGG 6 cut(s) 135, 255, 324, 968, 1055, 1070
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 6 cut(s) 104, 189, 198, 347, 618, 1090
NaeI GCCGGC 2 cut(s) 843, 1144
NciI CCSGG 5 cut(s) 255, 324, 968, 1055, 1070
NgoMIV GCCGGC 2 cut(s) 841, 1142
NlaIII CATG 3 cut(s) 180, 337, 704
NlaIV GGNNCC 3 cut(s) 139, 677, 1110
NmeAIII GCCGAG 2 cut(s) 210, 408
NmuCI GTSAC 1 cut(s) 853
PaeR7I CTCGAG 1 cut(s) 774
PdiI GCCGGC 2 cut(s) 843, 1144
PfeI GAWTC 9 cut(s) 51, 73, 330, 415, 529, 591, 847, 888, 928
PinAI ACCGGT 3 cut(s) 750, 758, 956
PkrI GCNGC 4 cut(s) 182, 1060, 1079, 1113
PleI GAGTC 4 cut(s) 160, 432, 785, 1003
PpsI GAGTC 4 cut(s) 160, 432, 785, 1003
Psp124BI GAGCTC 2 cut(s) 312, 519
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 3 cut(s) 139, 677, 1110
PspPI GGNCC 2 cut(s) 1145, 1161
PspXI VCTCGAGB 1 cut(s) 774
PstI CTGCAG 1 cut(s) 1095
PstNI CAGNNNCTG 1 cut(s) 1012
RigI GGCCGGCC 1 cut(s) 1146
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
SacI GAGCTC 2 cut(s) 312, 519
SaqAI TTAA 8 cut(s) 461, 476, 548, 683, 726, 746, 833, 938
SatI GCNGC 4 cut(s) 181, 1059, 1078, 1112
Sau96I GGNCC 2 cut(s) 1145, 1161
SchI GAGTC 4 cut(s) 161, 433, 786, 1003
ScrFI CCNGG 6 cut(s) 135, 255, 324, 968, 1055, 1070
SduI GDGCHC 2 cut(s) 312, 519
SfcI CTRYAG 2 cut(s) 1019, 1091
Sfr274I CTCGAG 1 cut(s) 774
SgrAI CRCCGGYG 2 cut(s) 631, 956
SlaI CTCGAG 1 cut(s) 774
SmlI CTYRAG 2 cut(s) 774, 916
SmoI CTYRAG 2 cut(s) 774, 916
Sse9I AATT 6 cut(s) 397, 473, 523, 817, 834, 1027
SsiI CCGC 7 cut(s) 180, 771, 908, 1058, 1061, 1112, 1133
SspMI CTAG 2 cut(s) 240, 1158
SstI GAGCTC 2 cut(s) 312, 519
StyD4I CCNGG 6 cut(s) 133, 253, 322, 966, 1053, 1068
TaaI ACNGT 3 cut(s) 567, 868, 1103
TaqI TCGA 9 cut(s) 49, 78, 123, 150, 273, 594, 775, 870, 886
TasI AATT 6 cut(s) 397, 473, 523, 817, 834, 1027
TauI GCSGC 3 cut(s) 183, 1061, 1114
TfiI GAWTC 9 cut(s) 51, 73, 330, 415, 529, 591, 847, 888, 928
Tru1I TTAA 8 cut(s) 461, 476, 548, 683, 726, 746, 833, 938
Tru9I TTAA 8 cut(s) 461, 476, 548, 683, 726, 746, 833, 938
TscAI CASTG 2 cut(s) 310, 459
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 1 cut(s) 1077
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 1 cut(s) 391
TspGWI ACGGA 4 cut(s) 80, 219, 483, 636
TspRI CASTG 2 cut(s) 310, 459
XapI RAATTY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 774
XmiI GTMKAC 2 cut(s) 195, 696
XspI CTAG 2 cut(s) 240, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.