Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001751

Physical Location & Seq

Genomic Coordinates Forward (+)

35877067 .. 35881542

Gene Structure 4476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTAAAAATAAAGGCTTCTTGCCGTCAGGTCCTTCGGAGATTCCTATTCAGCGTAACCAAATAAAGGAAATTATATATTCCTTACTTCCAGCTTGCAAAGAGCTTGATGTAGATTCTGGTATTCCCTTTAAAGCGGATGCAATTATTGCAAACCCCCCAGCATATGGGCATACTCATGTGGCGGAGGCACTGAAAATACCTCTTCATATATTTTTTACAATGCCATGGACGCCAACAAGTGAATTTCCACATCCCTTGTCCCGCGTTAAACAACAAATTGGATATAGGCTATCGTATCAAATTGTTGACTCCTTAATATGGCTTGGAATACGGGACATGATTAATGATGTTCGGAAGAAAAAATTGAAATTACGACCCGTCACATATTTAAGTGGTTCACAAGGCTCCGAGTCTGATGTCCCACATGGATACATATGGAGTCCTCATCTTGTTCCCAAACCAAAAGGTATGCCAATTCTGATGCAATCGAGTGACTACGGAGATGCAATCGATGCAATTTTGATGCAGATTAAGCAGCTGCAGGTTTTTGATGGTCTGTTTGGTGACAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

192

Amino Acids

21.58

Weight (kDa)

8.56

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	5 - 83	5e-14	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03020 AT4G03020 AT4G03020
fragaria_vesca	FvH4_2g24350 FvH4_2g24350 FvH4_2g24350 FvH4_4g16870 FvH4_4g16870
malus_domestica	MD03G1273100.v1.1 MD11G1294100.v1.1 MD13G1176000.v1.1 MD16G1177700.v1.1
prunus_persica	Prupe.1G145000_v2.0.a1 Prupe.1G145000_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1
pyrus_communis	pycom03g21760 pycom11g26020 pycom13g15170
rosa_chinensis	RchiOBHm_Chr4g0420461 RchiOBHm_Chr6g0292221
rosa_laevigata	RLG00000007761 RLG00000012052
rosa_multiflora	Rmu_co8469755.1_g000001 Rmu_sc0002248.1_g000028 Rmu_sc0002993.1_g000006 Rmu_sc0017106.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363080 Rroxscaffold_7G00175340
rosa_rugosa	Rorug04G0163900 Rorug06G0224500 Rorug06G0224500
rosa_samantha	Rh4CG239900 Rh6AG337600 Rh6BG344900 Rh6CG352000
rosa_wichuraiana	Rw4G019470 Rw6G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	137, 185, 265
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	67, 167, 321
AgsI	TTSAA	1 cut(s)	370
AluBI	AGCT	3 cut(s)	95, 106, 541
AluI	AGCT	3 cut(s)	95, 106, 541
ApeKI	GCWGC	2 cut(s)	538, 541
ApoI	RAATTY	1 cut(s)	245
AseI	ATTAAT	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	528, 550
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	425
BisI	GCNGC	2 cut(s)	539, 542
BlsI	GCNGC	2 cut(s)	540, 543
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	409
BmsI	GCATC	5 cut(s)	130, 474, 496, 505, 516
Bsa29I	ATCGAT	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 167, 321
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	145, 253
BseLI	CCNNNNNNNGG	3 cut(s)	67, 167, 321
BseXI	GCAGC	2 cut(s)	528, 550
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	513
BslFI	GGGAC	3 cut(s)	247, 350, 407
BslI	CCNNNNNNNGG	3 cut(s)	67, 167, 321
BsmFI	GGGAC	3 cut(s)	247, 350, 407
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	3 cut(s)	137, 185, 265
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	535
BssECI	CCNNGG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	2 cut(s)	149, 515
BstC8I	GCNNGC	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	2 cut(s)	145, 253
BstFNI	CGCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 232, 515, 535
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	528, 550
Bsu15I	ATCGAT	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	425
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	145, 253
BtsIMutI	CAGTG	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	1 cut(s)	241
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	4 cut(s)	179, 228, 340, 428
CviJI	RGCY	7 cut(s)	18, 95, 106, 292, 325, 408, 541
CviKI_1	RGCY	7 cut(s)	18, 95, 106, 292, 325, 408, 541
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	182, 231, 343, 431
FaqI	GGGAC	3 cut(s)	247, 350, 407
FatI	CATG	4 cut(s)	178, 227, 339, 427
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	2 cut(s)	166, 437
Fnu4HI	GCNGC	2 cut(s)	539, 542
FokI	GGATG	2 cut(s)	152, 240
Fsp4HI	GCNGC	2 cut(s)	539, 542
GluI	GCNGC	2 cut(s)	539, 542
GsaI	CCCAGC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	182, 231, 343, 431
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	5 cut(s)	43, 116, 311, 413, 442
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	310, 401
Hpy188I	TCNGA	5 cut(s)	40, 357, 412, 418, 483
Hpy8I	GTNNAC	2 cut(s)	310, 401
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	8 cut(s)	99, 143, 152, 487, 509, 518, 529, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 232, 515, 535
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	182, 231, 343, 431
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	5 cut(s)	15, 105, 105, 174, 530
Lsp1109I	GCAGC	2 cut(s)	528, 550
LweI	GCATC	5 cut(s)	130, 474, 496, 505, 516
MaeIII	GTNAC	4 cut(s)	56, 382, 494, 566
MboII	GAAGA	2 cut(s)	197, 370
MluCI	AATT	9 cut(s)	72, 144, 245, 279, 303, 365, 371, 477, 519
MlyI	GAGTC	3 cut(s)	305, 422, 451
MnlI	CCTC	3 cut(s)	181, 213, 456
MseI	TTAA	7 cut(s)	6, 132, 270, 317, 345, 392, 534
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	149, 232, 515, 535
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	2 cut(s)	166, 437
NlaIII	CATG	4 cut(s)	182, 231, 343, 431
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	3 cut(s)	382, 494, 566
PfeI	GAWTC	2 cut(s)	43, 116
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	540, 543
PleI	GAGTC	3 cut(s)	305, 421, 450
PpsI	GAGTC	3 cut(s)	305, 421, 450
PpuMI	RGGWCCY	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	7 cut(s)	6, 132, 270, 317, 345, 392, 534
SatI	GCNGC	2 cut(s)	539, 542
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	3 cut(s)	305, 422, 451
SetI	ASST	7 cut(s)	34, 97, 108, 205, 472, 543, 549
SfaNI	GCATC	5 cut(s)	130, 474, 496, 505, 516
SfcI	CTRYAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	9 cut(s)	72, 144, 245, 279, 303, 365, 371, 477, 519
SsiI	CCGC	3 cut(s)	137, 185, 265
StyI	CCWWGG	1 cut(s)	227
TaqI	TCGA	2 cut(s)	491, 513
TasI	AATT	9 cut(s)	72, 144, 245, 279, 303, 365, 371, 477, 519
TfiI	GAWTC	2 cut(s)	43, 116
Tru1I	TTAA	7 cut(s)	6, 132, 270, 317, 345, 392, 534
Tru9I	TTAA	7 cut(s)	6, 132, 270, 317, 345, 392, 534
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	3 cut(s)	382, 494, 566
TseI	GCWGC	2 cut(s)	538, 541
Tsp45I	GTSAC	3 cut(s)	382, 494, 566
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.