Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001751

Physical Location & Seq

Genomic Coordinates Forward (+)

28532295 .. 28534373

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATTGCTGGAAAAGAAGAGAAGGTAGAACTTGGAAAGAAAAAAGAGAAAGAAGGGGCCCAAACCGAACAACCAAAACAGAAGAAAAACGTGGAGATCCTGTCTATAAAGAAGAATGTCAAGACATACAAGAGGGGTGCGAAGAAGGCTAAAGAAGATGACTGGGAGTATAACACTCCTGAAGAAGCAAAGATGAGGAAGAGAGCCCCACCTAAGAGAGCTAGGAACCCAACTTGGAAGACACTGAACCCCGCAGTGGCAAGGCACTTTCAAGACTTCTTCAATGTTGCCGTGAAAGACACGTCCGAATACTGGATCAGCAGCGATCTATTACGCCGGATAACCAAGCATGACCTCAGAGTGATCATCCAAGAGGGGGATGTCAAAACTGATGTGATTAGCGTTTATATTGATTTGTTGAAGTCTGATGCCGAAAAGCGAAATGCTCAAGTGGGATTTCTCACTGTAGACGCAGCGTACTATGCAATAAATCATGAGCAGAAGAAGGAAAAAGGTGAGGACACTAGACCGCTCGAGTGTGGTGTCGAAACATTGTTGATCGAACCACTGTGGTCGATCTTCCGTTTCCCAAAGCAATCGATGAATTCACCAATGAGGAGAAGTACCACCCTGAATGAGGCAAGAGTGGTAAAGCACATCAAGAAGTTCATACATACTGTGAACTTGACAAAGTTTAGAACCCCAGGTGACAGCCAAGATCCAGAGGTCACTAGGGAAAAATGCAAAGGCGAAGATGACAAAGAAAACCTAATTAAGGATGAAGAAGAAATGACCAAGAAGGAAAAAGAAACCAGGAACTGGATCTTGCAGAACAACATTGTGGAGACAAACTATGAACTCTATGAAGACTTTGAGTGCCCGCAGCAGAACACATCATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

301

Amino Acids

35.16

Weight (kDa)

8.92

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03020 AT4G03020 AT4G03020
fragaria_vesca	FvH4_2g24350 FvH4_2g24350 FvH4_2g24350 FvH4_4g16870 FvH4_4g16870
malus_domestica	MD03G1273100.v1.1 MD11G1294100.v1.1 MD13G1176000.v1.1 MD16G1177700.v1.1
prunus_persica	Prupe.1G145000_v2.0.a1 Prupe.1G145000_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1 Prupe.8G249600_v2.0.a1
pyrus_communis	pycom03g21760 pycom11g26020 pycom13g15170
rosa_chinensis	RchiOBHm_Chr4g0420461 RchiOBHm_Chr6g0292221
rosa_laevigata	RLG00000007761 RLG00000012052
rosa_multiflora	Rmu_co8469755.1_g000001 Rmu_sc0002248.1_g000028 Rmu_sc0002993.1_g000006 Rmu_sc0017106.1_g000005
rosa_roxburghii	Rroxscaffold_5G00363080 Rroxscaffold_7G00175340
rosa_rugosa	Rorug04G0163900 Rorug06G0224500 Rorug06G0224500
rosa_samantha	Rh4CG239900 Rh6AG337600 Rh6BG344900 Rh6CG352000
rosa_wichuraiana	Rw4G019470 Rw6G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	819
AccBSI	CCGCTC	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	3 cut(s)	252, 530, 881
AclWI	GGATC	4 cut(s)	91, 323, 713, 830
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	479, 625
AfiI	CCNNNNNNNGG	6 cut(s)	256, 312, 376, 637, 775, 819
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	272, 283, 421
AjiI	CACGTC	1 cut(s)	303
AjnI	CCWGG	2 cut(s)	703, 812
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	4 cut(s)	91, 323, 713, 830
AlwNI	CAGNNNCTG	1 cut(s)	819
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	57
ApaI	GGGCCC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	321, 473, 883
ApoI	RAATTY	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	57, 58
AsuHPI	GGTGA	3 cut(s)	527, 600, 719
AvaI	CYCGRG	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	61, 881
BanII	GRGCYC	2 cut(s)	61, 208
BbsI	GAAGAC	2 cut(s)	245, 873
BbvI	GCAGC	3 cut(s)	333, 485, 895
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	705, 814
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	3 cut(s)	222, 525, 732
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	3 cut(s)	322, 474, 884
BlsI	GCNGC	3 cut(s)	323, 475, 885
Bme1390I	CCNGG	2 cut(s)	705, 814
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	57, 58
BmiI	GGNNCC	3 cut(s)	58, 59, 227
BmrFI	CCNGG	2 cut(s)	705, 814
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	245, 873
BpuEI	CTTGAG	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	6 cut(s)	256, 312, 376, 637, 775, 819
Bse1I	ACTGG	3 cut(s)	167, 317, 824
BseBI	CCWGG	2 cut(s)	705, 814
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	3 cut(s)	366, 385, 784
BseLI	CCNNNNNNNGG	6 cut(s)	256, 312, 376, 637, 775, 819
BseMII	CTCAG	1 cut(s)	370
BseNI	ACTGG	3 cut(s)	167, 317, 824
BseRI	GAGGAG	1 cut(s)	631
BseSI	GKGCMC	2 cut(s)	61, 881
BseXI	GCAGC	3 cut(s)	333, 485, 895
BshFI	GGCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	6 cut(s)	256, 312, 376, 637, 775, 819
BsmAI	GTCTC	1 cut(s)	839
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	61, 208, 881
Bsp143I	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
BspACI	CCGC	3 cut(s)	252, 530, 881
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	369
BspDI	ATCGAT	1 cut(s)	599
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	58, 59, 227
BspPI	GGATC	4 cut(s)	91, 323, 713, 830
BsrBI	CCGCTC	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	167, 317, 824
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
Bst2UI	CCWGG	2 cut(s)	705, 814
Bst4CI	ACNGT	3 cut(s)	466, 570, 679
Bst6I	CTCTTC	2 cut(s)	12, 194
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	2 cut(s)	213, 356
BstENI	CCTNNNNNAGG	2 cut(s)	635, 773
BstF5I	GGATG	3 cut(s)	366, 385, 784
BstKTI	GATC	8 cut(s)	99, 318, 328, 366, 561, 579, 721, 825
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 482
BstNI	CCWGG	2 cut(s)	705, 814
BstSCI	CCNGG	2 cut(s)	703, 812
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	2 cut(s)	61, 881
BstV1I	GCAGC	3 cut(s)	333, 485, 895
BstV2I	GAAGAC	2 cut(s)	245, 873
BstX2I	RGATCY	3 cut(s)	96, 718, 822
BstYI	RGATCY	3 cut(s)	96, 718, 822
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	366, 385, 784
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	4 cut(s)	242, 261, 462, 566
Cac8I	GCNNGC	1 cut(s)	881
CaiI	CAGNNNCTG	1 cut(s)	819
CciI	TCATGA	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	57, 58
ClaI	ATCGAT	1 cut(s)	599
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	478, 624
CviAII	CATG	2 cut(s)	350, 494
CviJI	RGCY	5 cut(s)	59, 149, 206, 221, 714
CviKI_1	RGCY	5 cut(s)	59, 149, 206, 221, 714
CviQI	GTAC	2 cut(s)	478, 624
DdeI	CTNAG	2 cut(s)	213, 356
DpnI	GATC	8 cut(s)	98, 317, 327, 365, 560, 578, 720, 824
DpnII	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
Eam1104I	CTCTTC	2 cut(s)	12, 194
EarI	CTCTTC	2 cut(s)	12, 194
Eco24I	GRGCYC	2 cut(s)	61, 208
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	2 cut(s)	635, 773
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	703, 812
EcoT38I	GRGCYC	2 cut(s)	61, 208
FaeI	CATG	2 cut(s)	353, 497
FatI	CATG	2 cut(s)	349, 493
FauI	CCCGC	2 cut(s)	259, 888
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	322, 474, 884
FokI	GGATG	3 cut(s)	353, 392, 791
FriOI	GRGCYC	2 cut(s)	61, 208
Fsp4HI	GCNGC	3 cut(s)	322, 474, 884
FspBI	CTAG	3 cut(s)	222, 525, 732
GluI	GCNGC	3 cut(s)	322, 474, 884
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	2 cut(s)	353, 497
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	3 cut(s)	527, 600, 719
Hpy166II	GTNNAC	2 cut(s)	469, 682
Hpy188I	TCNGA	3 cut(s)	307, 359, 427
Hpy188III	TCNNGA	6 cut(s)	121, 179, 272, 494, 661, 722
Hpy8I	GTNNAC	2 cut(s)	469, 682
HpyAV	CCTTC	5 cut(s)	16, 47, 139, 499, 793
HpyCH4III	ACNGT	3 cut(s)	466, 570, 679
HpyCH4IV	ACGT	2 cut(s)	90, 302
HpyCH4V	TGCA	3 cut(s)	485, 744, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 482
HpyF3I	CTNAG	2 cut(s)	213, 356
HpySE526I	ACGT	2 cut(s)	90, 302
Hsp92II	CATG	2 cut(s)	353, 497
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
Lsp1109I	GCAGC	3 cut(s)	333, 485, 895
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	222, 525, 732
MaeII	ACGT	2 cut(s)	90, 302
MaeIII	GTNAC	2 cut(s)	707, 727
MalI	GATC	8 cut(s)	98, 317, 327, 365, 560, 578, 720, 824
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
MflI	RGATCY	3 cut(s)	96, 718, 822
MhlI	GDGCHC	3 cut(s)	61, 208, 881
MluCI	AATT	2 cut(s)	604, 771
MnlI	CCTC	8 cut(s)	126, 189, 365, 367, 511, 609, 631, 718
MseI	TTAA	1 cut(s)	774
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	705, 814
MvaI	CCWGG	2 cut(s)	705, 814
MwoI	GCNNNNNNNGC	2 cut(s)	146, 482
NdeII	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
NlaIII	CATG	2 cut(s)	353, 497
NlaIV	GGNNCC	3 cut(s)	58, 59, 227
NmuCI	GTSAC	2 cut(s)	707, 727
PaeR7I	CTCGAG	1 cut(s)	533
PagI	TCATGA	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	819
PkrI	GCNGC	3 cut(s)	323, 475, 885
Psp6I	CCWGG	2 cut(s)	703, 812
PspGI	CCWGG	2 cut(s)	703, 812
PspN4I	GGNNCC	3 cut(s)	58, 59, 227
PspOMI	GGGCCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	57, 58
PspXI	VCTCGAGB	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	819
PsuI	RGATCY	3 cut(s)	96, 718, 822
RsaI	GTAC	2 cut(s)	479, 625
RsaNI	GTAC	2 cut(s)	478, 624
SaqAI	TTAA	1 cut(s)	774
SatI	GCNGC	3 cut(s)	322, 474, 884
Sau3AI	GATC	8 cut(s)	96, 315, 325, 363, 558, 576, 718, 822
Sau96I	GGNCC	2 cut(s)	57, 58
ScrFI	CCNGG	2 cut(s)	705, 814
SduI	GDGCHC	3 cut(s)	61, 208, 881
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	447, 533
SmoI	CTYRAG	2 cut(s)	447, 533
Sse9I	AATT	2 cut(s)	604, 771
SsiI	CCGC	3 cut(s)	252, 530, 881
SspMI	CTAG	3 cut(s)	222, 525, 732
StyD4I	CCNGG	2 cut(s)	703, 812
TaaI	ACNGT	3 cut(s)	466, 570, 679
TaiI	ACGT	2 cut(s)	93, 305
TaqI	TCGA	5 cut(s)	534, 546, 561, 575, 599
TasI	AATT	2 cut(s)	604, 771
Tru1I	TTAA	1 cut(s)	774
Tru9I	TTAA	1 cut(s)	774
TscAI	CASTG	4 cut(s)	249, 261, 469, 573
TseFI	GTSAC	2 cut(s)	707, 727
TseI	GCWGC	3 cut(s)	321, 473, 883
Tsp45I	GTSAC	2 cut(s)	707, 727
TspDTI	ATGAA	5 cut(s)	617, 658, 795, 870, 879
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	4 cut(s)	249, 261, 469, 573
Van91I	CCANNNNNTGG	1 cut(s)	819
XagI	CCTNNNNNAGG	2 cut(s)	635, 773
XapI	RAATTY	1 cut(s)	604
XhoI	CTCGAG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	3 cut(s)	222, 525, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.