AT1G12064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017120
Physical Location & Seq
Reverse (-)
4077498 .. 4078095
598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12064.1

Sequence Viewer

Length: 330 bp
ATGAAGAAGACCTACAAGCTTCAAAGCCTCTTCTCTTCTCTCATCTTCCTCATAATCTTGCTATTGATTTCGAGAGCCGCGGCCGTCGGCTCTGGCGGTGTCTGCCGGCATCCACCATCACAAAACAGCTGCAAGACATGCATGGCGGAGCAAATGAAATACGACTGCCCTAAGTGCGTGCCGGTGCTCCGATGCATGGCTCGTTGTCTTTGGGGCGGTGTTACTCAGAGGAAGTGCACCACCACGTGTCGATGCGACACCGCGGCCAAGCCGTCGTTGCTGGAGTGTAAACGCTGCGTTTCTAGGTGTAAGTGTAGCTGTGCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.96

Weight (kDa)

9.39

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12064
fragaria_vesca FvH4_3g01020
malus_domestica MD10G1331300.v1.1
prunus_persica Prupe.4G010900_v2.0.a1
pyrus_communis pycom10g28080
rosa_chinensis RchiOBHm_Chr5g0001551
rosa_multiflora Rmu_sc0006320.1_g000013
rosa_rugosa Rorug04G0391000
rosa_samantha Rh5AG012100 Rh5BG014800 Rh5CG013100 Rh5DG012400
rosa_wichuraiana Rw5G001150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 263
AciI CCGC 8 cut(s) 78, 80, 96, 146, 216, 261, 263, 323
AcoI YGGCCR 2 cut(s) 81, 264
AcvI CACGTG 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 3 cut(s) 19, 129, 318
AluI AGCT 3 cut(s) 19, 129, 318
Alw21I GWGCWC 2 cut(s) 189, 239
Alw44I GTGCAC 1 cut(s) 235
AoxI GGCC 2 cut(s) 81, 264
ApaLI GTGCAC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 129, 294
BaeGI GKGCMC 1 cut(s) 239
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 189, 239
BbvI GCAGC 2 cut(s) 116, 281
BccI CCATC 1 cut(s) 124
BceAI ACGGC 2 cut(s) 68, 256
BfaI CTAG 1 cut(s) 303
BisI GCNGC 6 cut(s) 78, 81, 130, 264, 295, 324
BlsI GCNGC 6 cut(s) 79, 82, 131, 265, 296, 325
BmsI GCATC 3 cut(s) 118, 182, 242
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 78, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 2 cut(s) 105, 181
BseDI CCNNGG 2 cut(s) 78, 261
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 239
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 116, 281
Bsh1236I CGCG 2 cut(s) 80, 263
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 83, 266
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 189, 239
BsiSI CCGG 2 cut(s) 106, 182
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 2 cut(s) 83, 266
Bsp1286I GDGCHC 2 cut(s) 189, 239
BspACI CCGC 8 cut(s) 78, 80, 96, 146, 216, 261, 263, 323
BspANI GGCC 2 cut(s) 83, 266
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 2 cut(s) 80, 263
BsrFI RCCGGY 2 cut(s) 105, 181
BssAI RCCGGY 2 cut(s) 105, 181
BssECI CCNNGG 2 cut(s) 78, 261
Bst6I CTCTTC 2 cut(s) 35, 40
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 107, 179
BstDEI CTNAG 3 cut(s) 171, 225, 327
BstDSI CCRYGG 2 cut(s) 78, 261
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 2 cut(s) 80, 263
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 4 cut(s) 102, 138, 174, 277
BstNSI RCATGY 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 2 cut(s) 80, 263
BstV1I GCAGC 2 cut(s) 116, 281
BstV2I GAAGAC 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 83, 266
BtgI CCRYGG 2 cut(s) 78, 261
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 107, 179
Cfr10I RCCGGY 2 cut(s) 105, 181
Cfr42I CCGCGG 2 cut(s) 81, 264
CviAII CATG 3 cut(s) 138, 142, 196
DdeI CTNAG 3 cut(s) 171, 225, 327
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 81, 264
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 35, 40
EarI CTCTTC 2 cut(s) 35, 40
EciI GGCGGA 1 cut(s) 161
EclXI CGGCCG 1 cut(s) 81
Eco52I CGGCCG 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 246
EcoT22I ATGCAT 2 cut(s) 143, 197
FaeI CATG 3 cut(s) 141, 145, 199
FaiI YATR 4 cut(s) 53, 139, 143, 197
FatI CATG 3 cut(s) 137, 141, 195
Fnu4HI GCNGC 6 cut(s) 78, 81, 130, 264, 295, 324
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 6 cut(s) 78, 81, 130, 264, 295, 324
FspBI CTAG 1 cut(s) 303
GluI GCNGC 6 cut(s) 78, 81, 130, 264, 295, 324
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 83, 266
HapII CCGG 2 cut(s) 106, 182
Hin1II CATG 3 cut(s) 141, 145, 199
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 2 cut(s) 106, 182
Hpy166II GTNNAC 2 cut(s) 237, 290
Hpy188I TCNGA 2 cut(s) 191, 228
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 2 cut(s) 237, 290
Hpy99I CGWCG 2 cut(s) 89, 277
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 132, 141, 195, 237
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 138, 174, 277
HpyF3I CTNAG 3 cut(s) 171, 225, 327
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 3 cut(s) 141, 145, 199
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
KspI CCGCGG 2 cut(s) 81, 264
LmnI GCTCC 2 cut(s) 148, 192
LpnPI CCDG 4 cut(s) 78, 119, 195, 266
Lsp1109I GCAGC 2 cut(s) 116, 281
LweI GCATC 3 cut(s) 118, 182, 242
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 5 cut(s) 16, 19, 22, 27, 37
MhlI GDGCHC 2 cut(s) 189, 239
MnlI CCTC 3 cut(s) 38, 59, 222
Mph1103I ATGCAT 2 cut(s) 143, 197
MroNI GCCGGC 1 cut(s) 105
MspA1I CMGCKG 3 cut(s) 80, 129, 263
MspI CCGG 2 cut(s) 106, 182
MvnI CGCG 2 cut(s) 80, 263
MwoI GCNNNNNNNGC 4 cut(s) 102, 138, 174, 277
NaeI GCCGGC 1 cut(s) 107
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 3 cut(s) 141, 145, 199
NsiI ATGCAT 2 cut(s) 143, 197
NspI RCATGY 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 107
PkrI GCNGC 6 cut(s) 79, 82, 131, 265, 296, 325
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PspCI CACGTG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 129
SacII CCGCGG 2 cut(s) 81, 264
SatI GCNGC 6 cut(s) 78, 81, 130, 264, 295, 324
SduI GDGCHC 2 cut(s) 189, 239
SetI ASST 6 cut(s) 14, 21, 131, 248, 308, 320
SfaNI GCATC 3 cut(s) 118, 182, 242
Sfr303I CCGCGG 2 cut(s) 81, 264
SgrBI CCGCGG 2 cut(s) 81, 264
SsiI CCGC 8 cut(s) 78, 80, 96, 146, 216, 261, 263, 323
SspMI CTAG 1 cut(s) 303
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 71, 250
TauI GCSGC 4 cut(s) 80, 83, 266, 326
TseI GCWGC 2 cut(s) 129, 294
TspDTI ATGAA 2 cut(s) 17, 170
VneI GTGCAC 1 cut(s) 235
XceI RCATGY 1 cut(s) 141
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 2 cut(s) 143, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.