Rorug04G0391000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017120
Physical Location & Seq
Reverse (-)
55860002 .. 55860936
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0391000.1

Sequence Viewer

Length: 420 bp
ATGAGAAGCACCCCTCCATCTTCCCCGAATTCCGTGAGTTTCACAGTGCAAGACGTACAGTTTGAGACAAAGCCTAAGCAAGCCAGGACGAAGCAAACCTGGCAGCCAGCACCTCATGGTAAGTGGAAATTAAATGTCGATGGGAGTTTCCTACCTAGTAGTACAGTTGGGGGCCTGGGAGGCGTCCTTCGTGATGAGACTGGACAGTTCAAGGCAGCCTTCGCGCTGCAGATGTCAAATGCTGCATCAGCCAAACATGTGGAGCTCTTAGCTCTTAAGGAAGGCCTAAAGCTGGTCCGAACCCTTCAGCTAGAACATGTAATAGTCGAAACTGATTGTCAAGCGGCAACATATGATATACTTAATTCCAATCATGCTTTCATAGCAGAAGGAGGCTTAATTGATGATATAAAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.07

Weight (kDa)

6.9

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 45 - 124 1.5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12064
fragaria_vesca FvH4_3g01020
malus_domestica MD10G1331300.v1.1
prunus_persica Prupe.4G010900_v2.0.a1
pyrus_communis pycom10g28080
rosa_chinensis RchiOBHm_Chr5g0001551
rosa_multiflora Rmu_sc0006320.1_g000013
rosa_rugosa Rorug04G0391000
rosa_samantha Rh5AG012100 Rh5BG014800 Rh5CG013100 Rh5DG012400
rosa_wichuraiana Rw5G001150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 57, 163
AfiI CCNNNNNNNGG 1 cut(s) 292
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 2 cut(s) 256, 316
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 3 cut(s) 83, 98, 174
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 4 cut(s) 265, 272, 292, 310
AluI AGCT 4 cut(s) 265, 272, 292, 310
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 59, 191
AoxI GGCC 2 cut(s) 172, 283
ApeKI GCWGC 4 cut(s) 103, 215, 226, 242
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 172, 295
AvaII GGWCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 115, 213, 227, 229
BccI CCATC 2 cut(s) 25, 134
BciT130I CCWGG 3 cut(s) 85, 100, 176
BcoDI GTCTC 2 cut(s) 59, 191
BfaI CTAG 2 cut(s) 156, 311
BfmI CTRYAG 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 5 cut(s) 104, 216, 227, 243, 345
BlsI GCNGC 5 cut(s) 105, 217, 228, 244, 346
Bme1390I CCNGG 3 cut(s) 85, 100, 176
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 172, 295
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 3 cut(s) 85, 100, 176
BmsI GCATC 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 3 cut(s) 85, 100, 176
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 4 cut(s) 115, 213, 227, 229
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 174, 285
BsiHKAI GWGCWC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 59, 191
BsnI GGCC 2 cut(s) 174, 285
Bsp1286I GDGCHC 1 cut(s) 267
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 174, 285
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 175
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 85, 100, 176
Bst4CI ACNGT 4 cut(s) 46, 60, 166, 207
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 81, 108
BstDEI CTNAG 2 cut(s) 75, 268
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 59, 191
BstMWI GCNNNNNNNGC 5 cut(s) 100, 180, 221, 248, 383
BstNI CCWGG 3 cut(s) 85, 100, 176
BstNSI RCATGY 2 cut(s) 260, 320
BstSCI CCNGG 3 cut(s) 83, 98, 174
BstSFI CTRYAG 1 cut(s) 227
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 115, 213, 227, 229
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuRI GGCC 2 cut(s) 174, 285
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 81, 108
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 172, 295
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 56, 162
CviAII CATG 4 cut(s) 116, 257, 317, 374
CviQI GTAC 2 cut(s) 56, 162
DdeI CTNAG 2 cut(s) 75, 268
Ecl136II GAGCTC 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 83, 98, 174
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 4 cut(s) 119, 260, 320, 377
FaiI YATR 9 cut(s) 117, 258, 318, 352, 354, 359, 375, 383, 410
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 4 cut(s) 115, 256, 316, 373
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 104, 216, 227, 243, 345
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 5 cut(s) 104, 216, 227, 243, 345
FspBI CTAG 2 cut(s) 156, 311
GlaI GCGC 1 cut(s) 225
GluI GCNGC 5 cut(s) 104, 216, 227, 243, 345
HaeIII GGCC 2 cut(s) 174, 285
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 119, 260, 320, 377
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 197, 229, 275, 314, 383
HpyCH4III ACNGT 4 cut(s) 46, 60, 166, 207
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 49, 229, 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 180, 221, 248, 383
HpyF3I CTNAG 2 cut(s) 75, 268
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 119, 260, 320, 377
HspAI GCGC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 9 cut(s) 70, 85, 97, 112, 120, 161, 186, 188, 278
Lsp1109I GCAGC 4 cut(s) 115, 213, 227, 229
LweI GCATC 1 cut(s) 254
MaeI CTAG 2 cut(s) 156, 311
MaeII ACGT 1 cut(s) 54
MboII GAAGA 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 28, 128, 364, 399
MnlI CCTC 4 cut(s) 24, 123, 173, 386
MseI TTAA 4 cut(s) 131, 276, 363, 398
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 3 cut(s) 85, 100, 176
MvaI CCWGG 3 cut(s) 85, 100, 176
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 5 cut(s) 100, 180, 221, 248, 383
NdeI CATATG 1 cut(s) 352
NlaIII CATG 4 cut(s) 119, 260, 320, 377
NlaIV GGNNCC 1 cut(s) 173
NspI RCATGY 2 cut(s) 260, 320
PceI AGGCCT 1 cut(s) 285
PciI ACATGT 2 cut(s) 256, 316
PkrI GCNGC 5 cut(s) 105, 217, 228, 244, 346
PscI ACATGT 2 cut(s) 256, 316
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 83, 98, 174
PspGI CCWGG 3 cut(s) 83, 98, 174
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 2 cut(s) 172, 295
PstI CTGCAG 1 cut(s) 231
RsaI GTAC 2 cut(s) 57, 163
RsaNI GTAC 2 cut(s) 56, 162
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 131, 276, 363, 398
SatI GCNGC 5 cut(s) 104, 216, 227, 243, 345
Sau96I GGNCC 2 cut(s) 172, 295
ScrFI CCNGG 3 cut(s) 85, 100, 176
SduI GDGCHC 1 cut(s) 267
SetI ASST 9 cut(s) 57, 101, 115, 157, 267, 274, 294, 312, 417
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 28, 128, 364, 399
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 156, 311
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 83, 98, 174
TaaI ACNGT 4 cut(s) 46, 60, 166, 207
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 138, 327
TasI AATT 4 cut(s) 28, 128, 364, 399
TatI WGTACW 1 cut(s) 161
TauI GCSGC 1 cut(s) 347
Tru1I TTAA 4 cut(s) 131, 276, 363, 398
Tru9I TTAA 4 cut(s) 131, 276, 363, 398
TscAI CASTG 1 cut(s) 51
TseI GCWGC 4 cut(s) 103, 215, 226, 242
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 260, 320
XspI CTAG 2 cut(s) 156, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.