AT1G13300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023617
Physical Location & Seq
Forward (+)
4556878 .. 4558793
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13300.1

Sequence Viewer

Length: 1035 bp
ATGATTAAAAAGTTCAGCAATATGGATTACAACCAGAAACGAGAGAGATGTGGGCAATACATCGAAGCCCTCGAAGAGGAACGTCGCAAGATTCATGTATTTCAACGTGAACTTCCTCTTTGCTTAGACCTTGTAACTCAAGCGATCGAGGCATGTAAGAGGGAGTTACCGGAGATGACGACGGAGAATATGTACGGACAACCAGAGTGCTCGGAGCAGACGACCGGAGAATGTGGGCCGGTCTTGGAGCAGTTTCTAACTATTAAAGATTCATCGACATCCAACGAAGAAGAAGATGAAGAATTCGACGATGAGCATGGAAATCACGATCCAGACAATGATTCCGAGGACAAGAACACGAAATCTGATTGGCTTAAGTCTGTTCAACTCTGGAATCAACCCGACCACCCACTTCTTCCAAAAGAGGAAAGGTTGCAGCAGGAGACGATGACAAGAGATGAGAGTATGAGAAAAGATCCGATGGTGAACGGTGGCGAAGGGAGGAAGAGAGAGGCGGAGAAAGACGGAGGAGGAGGGAGAAAGCAAAGAAGGTGTTGGTCGTCGCAATTGCATAGACGCTTCTTGAACGCTCTTCAACACTTAGGTGGACCTCATGTAGCTACGCCAAAGCAAATCAGGGAGTTTATGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGCATACAAGAAGGCCACGCCAAACAGTCCCTAACAACGGAAACTCTCAAACGCAACATTTCGTAGTCGTCGGTGGTTTATGGGTACCACAATCGGACTACTCTACGGGCAAGACTACCGGAGGAGCCACCACCAGCAGTACCACCACAACCACCGGCATCTATGGAACCATGGCCGCACCGCCACCTCCACAATGGCCTAGCCATTCCAATTATAGACCGTCGATTATTGTGGACGAAGGATCGGGAAGTCATAGTGAAGGGGTCGTGGTCCGGTGTAGCTCGCCGGCGATGTCTTCTTCTACCCGTAATCATTACGTCAAGAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

344

Amino Acids

39.06

Weight (kDa)

6.03

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 9 - 56 1.8e-14 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13300 AT3G25790 AT3G25790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 787
AciI CCGC 3 cut(s) 515, 879, 884
AclWI GGATC 3 cut(s) 323, 470, 952
AcoI YGGCCR 1 cut(s) 876
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 3 cut(s) 194, 789, 844
AfiI CCNNNNNNNGG 2 cut(s) 76, 740
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 4 cut(s) 104, 386, 586, 596
AleI CACNNNNGTG 1 cut(s) 603
AluBI AGCT 2 cut(s) 620, 984
AluI AGCT 2 cut(s) 620, 984
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 3 cut(s) 323, 470, 952
AoxI GGCC 4 cut(s) 236, 716, 876, 899
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 787
AspS9I GGNCC 3 cut(s) 236, 608, 973
AsuHPI GGTGA 1 cut(s) 496
AvaII GGWCC 2 cut(s) 608, 973
BanI GGYRCC 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 475, 650
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 903
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 437, 879
BlsI GCNGC 2 cut(s) 438, 880
Bme18I GGWCC 2 cut(s) 608, 973
BmgT120I GGNCC 3 cut(s) 236, 608, 973
BmiI GGNNCC 3 cut(s) 789, 829, 871
BmsI GCATC 1 cut(s) 870
BpiI GAAGAC 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 345, 873
BsaWI WCCGGW 4 cut(s) 169, 224, 821, 975
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 740
Bse118I RCCGGY 3 cut(s) 238, 857, 988
BseDI CCNNGG 2 cut(s) 345, 873
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 76, 740
BseRI GAGGAG 3 cut(s) 543, 546, 840
BseXI GCAGC 1 cut(s) 448
Bsh1285I CGRYCG 2 cut(s) 147, 225
BshFI GGCC 4 cut(s) 238, 718, 878, 901
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 2 cut(s) 147, 225
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 7 cut(s) 170, 225, 239, 822, 858, 976, 989
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 2 cut(s) 76, 740
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 4 cut(s) 238, 718, 878, 901
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 4 cut(s) 144, 328, 475, 944
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 3 cut(s) 515, 879, 884
BspANI GGCC 4 cut(s) 238, 718, 878, 901
BspLI GGNNCC 3 cut(s) 789, 829, 871
BspPI GGATC 3 cut(s) 323, 470, 952
BspQI GCTCTTC 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 787
BspTI CTTAAG 1 cut(s) 374
BsrFI RCCGGY 3 cut(s) 238, 857, 988
BssAI RCCGGY 3 cut(s) 238, 857, 988
BssECI CCNNGG 2 cut(s) 345, 873
BssMI GATC 4 cut(s) 144, 328, 475, 944
BssT1I CCWWGG 1 cut(s) 873
Bst4CI ACNGT 3 cut(s) 491, 730, 924
Bst6I CTCTTC 3 cut(s) 69, 500, 597
BstAFI CTTAAG 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 986, 990
BstDEI CTNAG 2 cut(s) 124, 601
BstDSI CCRYGG 1 cut(s) 873
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 4 cut(s) 147, 331, 478, 947
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 4 cut(s) 144, 328, 475, 944
BstMCI CGRYCG 2 cut(s) 147, 225
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 990
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 4 cut(s) 238, 718, 878, 901
BtgI CCRYGG 1 cut(s) 873
BtgZI GCGATG 1 cut(s) 1007
BtsCI GGATG 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 986, 990
Cfr10I RCCGGY 3 cut(s) 238, 857, 988
Cfr13I GGNCC 3 cut(s) 236, 608, 973
CseI GACGC 1 cut(s) 585
Csp6I GTAC 3 cut(s) 193, 788, 843
CviAII CATG 5 cut(s) 95, 153, 317, 614, 874
CviQI GTAC 3 cut(s) 193, 788, 843
DdeI CTNAG 2 cut(s) 124, 601
DpnI GATC 4 cut(s) 146, 330, 477, 946
DpnII GATC 4 cut(s) 144, 328, 475, 944
EaeI YGGCCR 1 cut(s) 876
Eam1104I CTCTTC 3 cut(s) 69, 500, 597
EarI CTCTTC 3 cut(s) 69, 500, 597
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 873
Eco47I GGWCC 2 cut(s) 608, 973
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 5 cut(s) 98, 156, 320, 617, 877
FaqI GGGAC 1 cut(s) 716
FatI CATG 5 cut(s) 94, 152, 316, 613, 873
Fnu4HI GCNGC 2 cut(s) 437, 879
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 437, 879
FspBI CTAG 1 cut(s) 903
GluI GCNGC 2 cut(s) 437, 879
HaeIII GGCC 4 cut(s) 238, 718, 878, 901
HapII CCGG 7 cut(s) 170, 225, 239, 822, 858, 976, 989
HgaI GACGC 1 cut(s) 585
Hin1II CATG 5 cut(s) 98, 156, 320, 617, 877
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 4 cut(s) 91, 269, 341, 394
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 7 cut(s) 170, 225, 239, 822, 858, 976, 989
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 5 cut(s) 110, 487, 608, 663, 937
Hpy188I TCNGA 5 cut(s) 214, 346, 367, 480, 799
Hpy188III TCNNGA 6 cut(s) 326, 332, 391, 583, 948, 1024
Hpy8I GTNNAC 5 cut(s) 110, 487, 608, 663, 937
Hpy99I CGWCG 6 cut(s) 87, 184, 311, 565, 776, 928
HpyAV CCTTC 6 cut(s) 491, 543, 643, 708, 935, 956
HpyCH4III ACNGT 3 cut(s) 491, 730, 924
HpyCH4IV ACGT 3 cut(s) 82, 106, 1020
HpyCH4V TGCA 3 cut(s) 436, 571, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 124, 601
HpySE526I ACGT 3 cut(s) 82, 106, 1020
Hsp92II CATG 5 cut(s) 98, 156, 320, 617, 877
KpnI GGTACC 1 cut(s) 791
KroI GCCGGC 1 cut(s) 988
KroNI GCCGGC 1 cut(s) 990
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 4 cut(s) 144, 328, 475, 944
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 3 cut(s) 214, 247, 827
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 1 cut(s) 870
MaeI CTAG 1 cut(s) 903
MaeII ACGT 3 cut(s) 82, 106, 1020
MaeIII GTNAC 2 cut(s) 133, 165
MalI GATC 4 cut(s) 146, 330, 477, 946
MboI GATC 4 cut(s) 144, 328, 475, 944
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 4 cut(s) 302, 566, 913, 1030
MmeI TCCRAC 1 cut(s) 306
MreI CGCCGGCG 1 cut(s) 988
MroNI GCCGGC 1 cut(s) 988
MseI TTAA 6 cut(s) 6, 264, 375, 662, 678, 1033
MslI CAYNNNNRTG 1 cut(s) 603
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 7 cut(s) 170, 225, 239, 822, 858, 976, 989
MunI CAATTG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 149
NaeI GCCGGC 1 cut(s) 990
NcoI CCATGG 1 cut(s) 873
NdeII GATC 4 cut(s) 144, 328, 475, 944
NgoMIV GCCGGC 1 cut(s) 988
NlaIII CATG 5 cut(s) 98, 156, 320, 617, 877
NlaIV GGNNCC 3 cut(s) 789, 829, 871
NspI RCATGY 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 218
PdiI GCCGGC 1 cut(s) 990
PfeI GAWTC 4 cut(s) 91, 269, 341, 394
PkrI GCNGC 2 cut(s) 438, 880
Ple19I CGATCG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 789, 829, 871
PspPI GGNCC 3 cut(s) 236, 608, 973
PsuI RGATCY 1 cut(s) 475
PvuI CGATCG 1 cut(s) 147
RsaI GTAC 3 cut(s) 194, 789, 844
RsaNI GTAC 3 cut(s) 193, 788, 843
RseI CAYNNNNRTG 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 6 cut(s) 6, 264, 375, 662, 678, 1033
SatI GCNGC 2 cut(s) 437, 879
Sau3AI GATC 4 cut(s) 144, 328, 475, 944
Sau96I GGNCC 3 cut(s) 236, 608, 973
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 1 cut(s) 870
SgrAI CRCCGGYG 1 cut(s) 988
SinI GGWCC 2 cut(s) 608, 973
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 2 cut(s) 138, 374
SmoI CTYRAG 2 cut(s) 138, 374
Sse9I AATT 4 cut(s) 302, 566, 913, 1030
SsiI CCGC 3 cut(s) 515, 879, 884
SspMI CTAG 1 cut(s) 903
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 3 cut(s) 491, 730, 924
TaiI ACGT 3 cut(s) 85, 109, 1023
TaqI TCGA 6 cut(s) 63, 72, 147, 275, 306, 926
TasI AATT 4 cut(s) 302, 566, 913, 1030
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 4 cut(s) 91, 269, 341, 394
Tru1I TTAA 6 cut(s) 6, 264, 375, 662, 678, 1033
Tru9I TTAA 6 cut(s) 6, 264, 375, 662, 678, 1033
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 5 cut(s) 83, 261, 312, 662, 687
TspGWI ACGGA 4 cut(s) 197, 210, 540, 756
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 608, 973
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 894
XspI CTAG 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.