AT3G25790
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0023617
Physical Location & Seq
Forward (+)
9413052 .. 9415240
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25790.2

Sequence Viewer

Length: 1074 bp
ATGATCAAGAACTTAAGTAATATGAAGAATGACAATCAGAAACGTGAAAAATGTTGCGAGTACATCGAAGCTCTCGAAGAAGAACGTCGCAAGATCAATGTTTTCCAACGCGAGCTTCCTCTTTGCGTAGAGCTCGTGACTCAAGCGATTGAGGCGTATAAGAGGGAGATATCAGGGACGTCGACGGATAACTTATACGGACAGTCGGAGTGCTCAGAGCAGACCACCGGAGAATGTGGGCGCATCTTGGATCTGTTCATACCAATCAAACACTCTTCGACCTCCATAGAAGAAGAGGTTGATGACAAAGATGATGATGATGAAGAACACCAGTCTCATGAAACCGACATAGATTTTGATGACAAGAACATGAAATCTGAATGGCTCAAGTCTGTTCAGCTCTGGAACCAATCCGACGCAGTTGTTTCTAATAATAGACAGGATCGCTCACAAGAAAAGACAGAGACGCTGGTAGAGTTGATAAAAATAAACGATGAAGCAGCGAAGAAAAACAACAACATAAAATCACCGGTGACTACTAGCGATGGTGGCAGTGGCGGTGGCGGTGGCAGAAGAGGGCAGAGAAAGAATAGGCGGTGTTGGTCGCAAGAGTTACACAGACGCTTCTTGAACGCTCTTAAACAACTTGGTGGCCCTCATGTAGCTACGCCGAAACAGATAAGAGATATAATGAAGGTTGATGGGTTAACAAATGATGAAGTCAAAAGTCATTTACAGAAATATAGGCTGCATGCAAGACGGCCAAGCCAAACAACACCGAACAACAGAAACTCTCAAACGCAACATTTCGTGGTGGTTGGTGGAATATGGGTCCCACAGACTAACCATTCAACGGCCAACGCAGTCAACGCCGTCGCATCGGGTGAGACCACCGGGATTTATGGGCCTATGGTCAGTTCGTTGCCGTCCGAGTGGCCGAGGCATTCCAATTTTGGTAGGAAGATTTCGGAAGATAGATCAAGATGCTCTAACAACGGATTTTTTCGGTGTAGCTCACCAGCTATGTCTTGTTCTACTCGTACAAAGACGAAAGATGCAAAAATAATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

357

Amino Acids

40.37

Weight (kDa)

7.6

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 6 - 57 1.9e-16 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13300 AT3G25790 AT3G25790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 182
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 558, 564, 595
AclWI GGATC 2 cut(s) 258, 450
AcoI YGGCCR 3 cut(s) 761, 855, 935
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 2 cut(s) 62, 1042
AfiI CCNNNNNNNGG 1 cut(s) 853
AflII CTTAAG 1 cut(s) 13
AgeI ACCGGT 1 cut(s) 529
AgsI TTSAA 2 cut(s) 631, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 7 cut(s) 71, 115, 133, 400, 665, 1014, 1022
AluI AGCT 7 cut(s) 71, 115, 133, 400, 665, 1014, 1022
Alw21I GWGCWC 2 cut(s) 135, 215
Alw26I GTCTC 3 cut(s) 339, 458, 881
AlwI GGATC 2 cut(s) 258, 450
AoxI GGCC 5 cut(s) 652, 761, 855, 905, 935
ApeKI GCWGC 2 cut(s) 500, 748
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AsiGI ACCGGT 1 cut(s) 529
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 3 cut(s) 653, 832, 905
AsuC2I CCSGG 1 cut(s) 895
AsuHPI GGTGA 4 cut(s) 519, 544, 896, 1008
AvaII GGWCC 1 cut(s) 832
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 1 cut(s) 134
Bbv12I GWGCWC 2 cut(s) 135, 215
BbvI GCAGC 2 cut(s) 512, 735
BccI CCATC 2 cut(s) 539, 695
BceAI ACGGC 4 cut(s) 776, 857, 870, 910
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 895
BcoDI GTCTC 3 cut(s) 339, 458, 881
BfaI CTAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 2 cut(s) 501, 749
BlsI GCNGC 2 cut(s) 502, 750
Bme1390I CCNGG 1 cut(s) 895
Bme18I GGWCC 1 cut(s) 832
BmgT120I GGNCC 3 cut(s) 653, 832, 905
BmiI GGNNCC 3 cut(s) 407, 833, 834
BmrFI CCNGG 1 cut(s) 895
BmsI GCATC 4 cut(s) 252, 887, 974, 1045
BpuEI CTTGAG 2 cut(s) 126, 371
BpuMI CCSGG 1 cut(s) 895
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 1 cut(s) 938
BsaWI WCCGGW 2 cut(s) 227, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 853
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 938
BseLI CCNNNNNNNGG 1 cut(s) 853
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 512, 735
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 654, 763, 857, 907, 937
BshTI ACCGGT 1 cut(s) 529
BsiHKAI GWGCWC 2 cut(s) 135, 215
BsiSI CCGG 3 cut(s) 228, 530, 894
BslFI GGGAC 2 cut(s) 190, 818
BslI CCNNNNNNNGG 1 cut(s) 853
BsmAI GTCTC 3 cut(s) 339, 458, 881
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 2 cut(s) 190, 818
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 5 cut(s) 654, 763, 857, 907, 937
Bso31I GGTCTC 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 135, 215
Bsp143I GATC 5 cut(s) 3, 93, 250, 442, 977
BspACI CCGC 3 cut(s) 558, 564, 595
BspANI GGCC 5 cut(s) 654, 763, 857, 907, 937
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 111
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 3 cut(s) 407, 833, 834
BspPI GGATC 2 cut(s) 258, 450
BspTI CTTAAG 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 938
BssMI GATC 5 cut(s) 3, 93, 250, 442, 977
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 3 cut(s) 280, 288, 568
BstACI GRCGYC 1 cut(s) 179
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 113, 753
BstDEI CTNAG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 5 cut(s) 6, 96, 253, 445, 980
BstMAI GTCTC 3 cut(s) 339, 458, 881
BstMBI GATC 5 cut(s) 3, 93, 250, 442, 977
BstMWI GCNNNNNNNGC 3 cut(s) 152, 549, 869
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 1 cut(s) 893
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 512, 735
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 5 cut(s) 654, 763, 857, 907, 937
BtgZI GCGATG 1 cut(s) 558
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 113, 753
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 3 cut(s) 653, 832, 905
CseI GACGC 3 cut(s) 425, 475, 630
Csp6I GTAC 2 cut(s) 61, 1041
CspAI ACCGGT 1 cut(s) 529
CviAII CATG 4 cut(s) 338, 370, 659, 752
CviQI GTAC 2 cut(s) 61, 1041
DdeI CTNAG 1 cut(s) 214
DpnI GATC 5 cut(s) 5, 95, 252, 444, 979
DpnII GATC 5 cut(s) 3, 93, 250, 442, 977
EaeI YGGCCR 3 cut(s) 761, 855, 935
Eam1104I CTCTTC 3 cut(s) 280, 288, 568
EarI CTCTTC 3 cut(s) 280, 288, 568
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 881
Eco32I GATATC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 832
EcoRV GATATC 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 4 cut(s) 341, 373, 662, 755
FaqI GGGAC 2 cut(s) 190, 818
FatI CATG 4 cut(s) 337, 369, 658, 751
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 501, 749
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 501, 749
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 242
GluI GCNGC 2 cut(s) 501, 749
HaeIII GGCC 5 cut(s) 654, 763, 857, 907, 937
HapII CCGG 3 cut(s) 228, 530, 894
HgaI GACGC 3 cut(s) 425, 475, 630
HhaI GCGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 4 cut(s) 341, 373, 662, 755
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 3 cut(s) 183, 708, 868
HindII GTYRAC 3 cut(s) 183, 708, 868
HinfI GANTC 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 708
HpaII CCGG 3 cut(s) 228, 530, 894
HphI GGTGA 4 cut(s) 519, 544, 896, 1008
Hpy166II GTNNAC 3 cut(s) 183, 708, 868
Hpy188I TCNGA 7 cut(s) 39, 208, 217, 379, 415, 931, 970
Hpy188III TCNNGA 7 cut(s) 7, 74, 136, 338, 403, 628, 981
Hpy8I GTNNAC 3 cut(s) 183, 708, 868
Hpy99I CGWCG 5 cut(s) 90, 184, 187, 419, 878
HpyAV CCTTC 1 cut(s) 688
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 3 cut(s) 43, 85, 179
HpyCH4V TGCA 3 cut(s) 751, 755, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 549, 869
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 3 cut(s) 43, 85, 179
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 4 cut(s) 341, 373, 662, 755
HspAI GCGC 1 cut(s) 241
KflI GGGWCCC 1 cut(s) 832
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 708
Kzo9I GATC 5 cut(s) 3, 93, 250, 442, 977
LpnPI CCDG 9 cut(s) 159, 241, 344, 388, 425, 455, 543, 907, 1032
Lsp1109I GCAGC 2 cut(s) 512, 735
LweI GCATC 4 cut(s) 252, 887, 974, 1045
MaeI CTAG 1 cut(s) 540
MaeII ACGT 3 cut(s) 43, 85, 179
MaeIII GTNAC 3 cut(s) 136, 532, 612
MalI GATC 5 cut(s) 5, 95, 252, 444, 979
MboI GATC 5 cut(s) 3, 93, 250, 442, 977
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 135, 215
MluCI AATT 1 cut(s) 949
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 3 cut(s) 130, 186, 438
MnlI CCTC 8 cut(s) 129, 145, 156, 289, 292, 569, 666, 933
MseI TTAA 3 cut(s) 14, 639, 707
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 3 cut(s) 228, 530, 894
MspR9I CCNGG 1 cut(s) 895
Mva1269I GAATGC 1 cut(s) 943
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 152, 549, 869
NciI CCSGG 1 cut(s) 895
NdeII GATC 5 cut(s) 3, 93, 250, 442, 977
NlaIII CATG 4 cut(s) 341, 373, 662, 755
NlaIV GGNNCC 3 cut(s) 407, 833, 834
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 2 cut(s) 136, 532
NspI RCATGY 1 cut(s) 755
PaeI GCATGC 1 cut(s) 755
PagI TCATGA 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 943
PinAI ACCGGT 1 cut(s) 529
PkrI GCNGC 2 cut(s) 502, 750
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 832
PspN4I GGNNCC 3 cut(s) 407, 833, 834
PspPI GGNCC 3 cut(s) 653, 832, 905
PspPPI RGGWCCY 1 cut(s) 832
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 62, 1042
RsaNI GTAC 2 cut(s) 61, 1041
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 181
SaqAI TTAA 3 cut(s) 14, 639, 707
SatI GCNGC 2 cut(s) 501, 749
Sau3AI GATC 5 cut(s) 3, 93, 250, 442, 977
Sau96I GGNCC 3 cut(s) 653, 832, 905
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 895
SduI GDGCHC 2 cut(s) 135, 215
SfaNI GCATC 4 cut(s) 252, 887, 974, 1045
SgrAI CRCCGGYG 1 cut(s) 529
SgrDI CGTCGACG 1 cut(s) 181
SinI GGWCC 1 cut(s) 832
SmlI CTYRAG 3 cut(s) 13, 141, 386
SmoI CTYRAG 3 cut(s) 13, 141, 386
SphI GCATGC 1 cut(s) 755
Sse9I AATT 1 cut(s) 949
SsiI CCGC 3 cut(s) 558, 564, 595
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 893
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 3 cut(s) 46, 88, 182
TaqI TCGA 4 cut(s) 66, 75, 182, 278
TasI AATT 1 cut(s) 949
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 3 cut(s) 14, 639, 707
Tru9I TTAA 3 cut(s) 14, 639, 707
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 136, 532
TseI GCWGC 2 cut(s) 500, 748
Tsp45I GTSAC 2 cut(s) 136, 532
TspDTI ATGAA 8 cut(s) 38, 247, 336, 354, 386, 510, 707, 732
TspGWI ACGGA 3 cut(s) 200, 213, 1011
TspRI CASTG 1 cut(s) 559
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 832
XceI RCATGY 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 1 cut(s) 540
ZraI GACGTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.