AT1G13880
MYB Family

ELM2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020960
Physical Location & Seq
Forward (+)
4748831 .. 4751234
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13880.3

Sequence Viewer

Length: 1275 bp
ATGGGTTTCAAGCGAACGTTTGACGCTGAAGATGTTCAAGAGCTCAACGTTAAGAATGGAAGACAGATTAGTTACTGTAATAAGCTGGCCAAACTAGATGAAGGAGTTCCATATCGTCTTTCACTGGAGAAGCCAGGTGTCGTAGGATATGATATAAGTGATCTCTACGGGTATAAATGTGAGGATAACGTTGACAAGGGGTTTGAGACCAATGCGCCTTTCTCTTGGATCACAACTGGTTTGTCTGAGGAGGATTCTCAGTCTGGAGCTACGATTCAGTCTACCATTTCTCATGAATCTCCTGAGTCAGATATACCTTGGAGACCGGTTTGCTCTGGGGAAGAAGATGGCTATTGGTGTCCGATTTCTCCTAGAAAAACGGTTCCAATCGGGTCAGATTACCAGGCTGATATTCCTGAATGTGTCAAGGAAGAGGCAAATGATCAGTCGGGTCAAGGTGTTGGTTACGATGAAGAACAAGTGACAGGGAAGTGCGTAATTCCAATGCCTGACTGTGAAACCGAGGTCTGCAAGATTGGTAAAGGAAGAAAGGAATGCATTTGCCTGGATAAAGGTTCCATCAGATGTGTACAGCAGCATATTATGGAAAACAGGGAAGATTTGTTTGCAACTATTGGGTACGACAGGTGTCTGGATATAGGTCTTTGTGAAATGGGGGAGGAAGTTGCTGCTAGACTAACTGAAGACGAGGAAGATCTGTTTCATGAGATTGTTTACTCCAATCCGGTTTCAATGGACCGGGATTTCTGGAAACACCTAAAGTCTGCGTTTCCTTCACGAACCATGAAGGAAATTGTGAGCTATTATTTCAATGTCTTTATCCTGCGAAGACGAGCTATCCAGAACCGTTCTAAAAGCCTGGATGTTGATAGTGATGATGATGAGTGGCAAGTAGAGTATGACAACACCTTTTATGGTGCTGAAACTCCATCAGATGACAAAGCCGAAAAAAGCCTCTCAAGAGACGAAGGAGAAGAGGTTAATGCTAATGAAGATTCGTACATGTCCTTTGAGAATCAGTCCAACGCAATCTACTCTCGATGTCCAGTTAGAAATAGAGAAGAATCCAACATTGGGAATTACTGGCGCCACTGCAATGATCTTGTGGATCAGTCGTATTCATTTGATCCTTGTGATTCAATACTGCCAGATCATTGTTGGACTAAGAACATTGATCTGCTTCCAACTTCAAACATTATCGACGAAATCTTTGGTCAAGACCACCCATGGGATGATTTCTCCAGAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2 Myb_DNA-binding

Protein Analysis

424

Amino Acids

48.43

Weight (kDa)

4.43

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13880 AT1G13880 AT1G13880 AT2G03470 AT2G03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1107
AccI GTMKAC 1 cut(s) 281
AclI AACGTT 3 cut(s) 17, 48, 189
AclWI GGATC 3 cut(s) 236, 1137, 1142
AcoI YGGCCR 1 cut(s) 87
AcuI CTGAAG 2 cut(s) 48, 723
AcyI GRCGYC 1 cut(s) 1108
AfaI GTAC 3 cut(s) 591, 641, 1022
AfiI CCNNNNNNNGG 2 cut(s) 1095, 1249
AflIII ACRYGT 1 cut(s) 1023
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 6 cut(s) 10, 38, 753, 832, 1161, 1212
AjnI CCWGG 4 cut(s) 133, 402, 564, 879
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 1077, 1109
AluBI AGCT 5 cut(s) 43, 85, 269, 822, 857
AluI AGCT 5 cut(s) 43, 85, 269, 822, 857
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 3 cut(s) 200, 316, 978
AlwI GGATC 3 cut(s) 236, 1137, 1142
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 595, 689
ArsI GACNNNNNNTTYG 6 cut(s) 185, 217, 431, 463, 1214, 1246
AsiGI ACCGGT 1 cut(s) 325
Asp700I GAANNNNTTC 2 cut(s) 33, 105
AspLEI GCGC 2 cut(s) 217, 1110
AspS9I GGNCC 1 cut(s) 757
AsuC2I CCSGG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 757
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 1107
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 3 cut(s) 67, 711, 856
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 607, 676
BccI CCATC 3 cut(s) 341, 587, 958
BciT130I CCWGG 4 cut(s) 135, 404, 566, 881
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 3 cut(s) 200, 316, 978
BfaI CTAG 3 cut(s) 95, 372, 693
BfoI RGCGCY 1 cut(s) 1111
BglII AGATCT 1 cut(s) 715
BisI GCNGC 2 cut(s) 596, 690
BlsI GCNGC 2 cut(s) 597, 691
Bme1390I CCNGG 5 cut(s) 135, 404, 566, 761, 881
Bme18I GGWCC 1 cut(s) 757
BmgT120I GGNCC 1 cut(s) 757
BmiI GGNNCC 3 cut(s) 384, 577, 1109
BmrFI CCNGG 5 cut(s) 135, 404, 566, 761, 881
BoxI GACNNNNGTC 1 cut(s) 648
BpiI GAAGAC 3 cut(s) 67, 711, 856
BpmI CTGGAG 3 cut(s) 146, 285, 1246
BpuEI CTTGAG 1 cut(s) 964
BpuMI CCSGG 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 1108
BsaI GGTCTC 2 cut(s) 200, 316
BsaJI CCNNGG 3 cut(s) 317, 522, 1247
BsaWI WCCGGW 2 cut(s) 325, 745
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 1095, 1249
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 4 cut(s) 129, 241, 1067, 1109
Bse3DI GCAATG 1 cut(s) 1123
BseBI CCWGG 4 cut(s) 135, 404, 566, 881
BseDI CCNNGG 3 cut(s) 317, 522, 1247
BseGI GGATG 2 cut(s) 889, 1258
BseLI CCNNNNNNNGG 2 cut(s) 1095, 1249
BseMI GCAATG 1 cut(s) 1123
BseMII CTCAG 3 cut(s) 237, 272, 294
BseNI ACTGG 4 cut(s) 129, 241, 1067, 1109
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 607, 676
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 1107
BshTI ACCGGT 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 3 cut(s) 326, 746, 760
BslI CCNNNNNNNGG 2 cut(s) 1095, 1249
BsmAI GTCTC 3 cut(s) 200, 316, 978
BsmBI CGTCTC 1 cut(s) 978
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 2 cut(s) 200, 316
Bsp1286I GDGCHC 1 cut(s) 45
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
Bsp19I CCATGG 1 cut(s) 1247
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 238, 271, 295
BspHI TCATGA 2 cut(s) 292, 724
BspLI GGNNCC 3 cut(s) 384, 577, 1109
BspPI GGATC 3 cut(s) 236, 1137, 1142
BspT107I GGYRCC 1 cut(s) 1107
BspTNI GGTCTC 2 cut(s) 200, 316
BsrDI GCAATG 1 cut(s) 1123
BsrFI RCCGGY 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 4 cut(s) 129, 241, 1067, 1109
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 317, 522, 1247
BssMI GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
BssNI GRCGYC 1 cut(s) 1108
BssT1I CCWWGG 2 cut(s) 317, 1247
Bst2UI CCWGG 4 cut(s) 135, 404, 566, 881
Bst4CI ACNGT 4 cut(s) 77, 382, 515, 869
Bst6I CTCTTC 2 cut(s) 426, 990
BstACI GRCGYC 1 cut(s) 1108
BstAUI TGTACA 1 cut(s) 589
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 4 cut(s) 246, 258, 303, 1185
BstDSI CCRYGG 1 cut(s) 1247
BstF5I GGATG 2 cut(s) 889, 1258
BstH2I RGCGCY 1 cut(s) 1111
BstHHI GCGC 2 cut(s) 217, 1110
BstKTI GATC 9 cut(s) 163, 231, 445, 718, 1123, 1132, 1150, 1174, 1198
BstMAI GTCTC 3 cut(s) 200, 316, 978
BstMBI GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
BstNI CCWGG 4 cut(s) 135, 404, 566, 881
BstNSI RCATGY 1 cut(s) 1027
BstPAI GACNNNNGTC 1 cut(s) 648
BstSCI CCNGG 5 cut(s) 133, 402, 564, 759, 879
BstV1I GCAGC 2 cut(s) 607, 676
BstV2I GAAGAC 3 cut(s) 67, 711, 856
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 1247
BtsCI GGATG 2 cut(s) 889, 1258
BtsI GCAGTG 1 cut(s) 1111
BtsIMutI CAGTG 2 cut(s) 122, 1111
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 2 cut(s) 292, 724
CfoI GCGC 2 cut(s) 217, 1110
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 757
CseI GACGC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 590, 640, 1021
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 5 cut(s) 293, 725, 805, 1024, 1248
CviQI GTAC 3 cut(s) 590, 640, 1021
DdeI CTNAG 4 cut(s) 246, 258, 303, 1185
DinI GGCGCC 1 cut(s) 1109
DpnI GATC 9 cut(s) 162, 230, 444, 717, 1122, 1131, 1149, 1173, 1197
DpnII GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 426, 990
EarI CTCTTC 2 cut(s) 426, 990
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 317, 1247
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 2 cut(s) 200, 316
Eco47I GGWCC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 48, 723
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 4 cut(s) 133, 402, 564, 879
EcoT14I CCWWGG 2 cut(s) 317, 1247
EcoT22I ATGCAT 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 1109
EheI GGCGCC 1 cut(s) 1109
ErhI CCWWGG 2 cut(s) 317, 1247
Esp3I CGTCTC 1 cut(s) 978
FaeI CATG 5 cut(s) 296, 728, 808, 1027, 1251
FatI CATG 5 cut(s) 292, 724, 804, 1023, 1247
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 596, 690
FokI GGATG 2 cut(s) 896, 1265
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 596, 690
FspBI CTAG 3 cut(s) 95, 372, 693
GlaI GCGC 2 cut(s) 216, 1109
GluI GCNGC 2 cut(s) 596, 690
GsuI CTGGAG 3 cut(s) 146, 285, 1246
HaeII RGCGCY 1 cut(s) 1111
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 326, 746, 760
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 217, 1110
Hin1I GRCGYC 1 cut(s) 1108
Hin1II CATG 5 cut(s) 296, 728, 808, 1027, 1251
Hin6I GCGC 2 cut(s) 215, 1108
HinP1I GCGC 2 cut(s) 215, 1108
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 8 cut(s) 254, 274, 296, 305, 1016, 1036, 1085, 1157
HpaII CCGG 3 cut(s) 326, 746, 760
Hpy166II GTNNAC 4 cut(s) 193, 282, 590, 736
Hpy188I TCNGA 6 cut(s) 247, 310, 363, 397, 584, 955
Hpy8I GTNNAC 4 cut(s) 193, 282, 590, 736
Hpy99I CGWCG 1 cut(s) 1226
HpyAV CCTTC 4 cut(s) 95, 802, 804, 983
HpyCH4III ACNGT 4 cut(s) 77, 382, 515, 869
HpyCH4IV ACGT 3 cut(s) 17, 48, 189
HpyCH4V TGCA 4 cut(s) 531, 558, 629, 1116
HpyF3I CTNAG 4 cut(s) 246, 258, 303, 1185
HpySE526I ACGT 3 cut(s) 17, 48, 189
Hsp92I GRCGYC 1 cut(s) 1108
Hsp92II CATG 5 cut(s) 296, 728, 808, 1027, 1251
HspAI GCGC 2 cut(s) 215, 1108
KasI GGCGCC 1 cut(s) 1107
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 2 cut(s) 607, 676
MaeI CTAG 3 cut(s) 95, 372, 693
MaeII ACGT 3 cut(s) 17, 48, 189
MaeIII GTNAC 3 cut(s) 71, 464, 481
MalI GATC 9 cut(s) 162, 230, 444, 717, 1122, 1131, 1149, 1173, 1197
MboI GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 3 cut(s) 498, 813, 1099
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 1108
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 4 cut(s) 1068, 1113, 1160, 1229
Mox20I TGGCCA 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 560
MroXI GAANNNNTTC 2 cut(s) 33, 105
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 51, 1002
MslI CAYNNNNRTG 1 cut(s) 1116
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 3 cut(s) 326, 746, 760
MspR9I CCNGG 5 cut(s) 135, 404, 566, 761, 881
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 4 cut(s) 135, 404, 566, 881
NarI GGCGCC 1 cut(s) 1108
NciI CCSGG 1 cut(s) 761
NcoI CCATGG 1 cut(s) 1247
NdeII GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
NlaIII CATG 5 cut(s) 296, 728, 808, 1027, 1251
NlaIV GGNNCC 3 cut(s) 384, 577, 1109
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 560
NspI RCATGY 1 cut(s) 1027
PagI TCATGA 2 cut(s) 292, 724
PciI ACATGT 1 cut(s) 1023
PctI GAATGC 1 cut(s) 560
PdmI GAANNNNTTC 2 cut(s) 33, 105
PfeI GAWTC 7 cut(s) 254, 274, 296, 1016, 1036, 1085, 1157
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 2 cut(s) 597, 691
PleI GAGTC 1 cut(s) 313
PluTI GGCGCC 1 cut(s) 1111
PpsI GAGTC 1 cut(s) 313
PscI ACATGT 1 cut(s) 1023
PshAI GACNNNNGTC 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 45
Psp1406I AACGTT 3 cut(s) 17, 48, 189
Psp6I CCWGG 4 cut(s) 133, 402, 564, 879
PspGI CCWGG 4 cut(s) 133, 402, 564, 879
PspN4I GGNNCC 3 cut(s) 384, 577, 1109
PspPI GGNCC 1 cut(s) 757
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 3 cut(s) 591, 641, 1022
RsaNI GTAC 3 cut(s) 590, 640, 1021
RseI CAYNNNNRTG 1 cut(s) 1116
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 51, 1002
SatI GCNGC 2 cut(s) 596, 690
Sau3AI GATC 9 cut(s) 160, 228, 442, 715, 1120, 1129, 1147, 1171, 1195
Sau96I GGNCC 1 cut(s) 757
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 5 cut(s) 135, 404, 566, 761, 881
SduI GDGCHC 1 cut(s) 45
SfoI GGCGCC 1 cut(s) 1109
SinI GGWCC 1 cut(s) 757
SmiMI CAYNNNNRTG 1 cut(s) 1116
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
Sse9I AATT 3 cut(s) 498, 813, 1099
SspDI GGCGCC 1 cut(s) 1107
SspMI CTAG 3 cut(s) 95, 372, 693
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 5 cut(s) 133, 402, 564, 759, 879
StyI CCWWGG 2 cut(s) 317, 1247
TaaI ACNGT 4 cut(s) 77, 382, 515, 869
TaiI ACGT 3 cut(s) 20, 51, 192
TaqI TCGA 2 cut(s) 1060, 1221
TasI AATT 3 cut(s) 498, 813, 1099
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 7 cut(s) 254, 274, 296, 1016, 1036, 1085, 1157
Tru1I TTAA 2 cut(s) 51, 1002
Tru9I TTAA 2 cut(s) 51, 1002
TscAI CASTG 2 cut(s) 129, 1118
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 595, 689
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 7 cut(s) 114, 309, 486, 713, 821, 1026, 1131
TspRI CASTG 2 cut(s) 129, 1118
VpaK11BI GGWCC 1 cut(s) 757
XceI RCATGY 1 cut(s) 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 1176
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 33, 105
XspI CTAG 3 cut(s) 95, 372, 693
Zsp2I ATGCAT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.