AT2G03470
MYB Family

ELM2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0020960
Physical Location & Seq
Reverse (-)
1045446 .. 1047744
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03470.1

Sequence Viewer

Length: 1353 bp
ATGGGATTAAAGCGACCTTATGATGCTGAAGAGATGCAAAAGTGCAATGCTAAGCATGCAAGACAGCTTAGTTACAAAAACCATAACCAATTTGACGAAGCTATTCCATATCATCATGCTTCTATGGAGAAGAAGACAAATGTTTTAGTAGAGGATCTGATTGGTCTCTGTGAGAATCCTACGTGGACTAATGATGCAAATCACGTTGACAAGGGTTTTGAAACAACCGGTTTGTGTCAGGAAGATTCTCAGTCTGGAGTGACGACTCAGTCAGATCTTTCTCATCAATCTTCTGGTTCAGATTTCACCTGGAAGCCAGTGGAAGATGTTTATACTTGTTTGATGAATCAACCTCCTAGGAAACAAGTTCTTGTTGGGTCTAATCATCAAGCGGATATTCCCGAGTTTGTCAAGGAAGAGATTCTTGATCAGTCAGAGGCTCGAACTAAGGAGGACTTAGAAGGGAAGCTGATGAGAAAGTGTGTGATACCAATGTCTGACTCTGACCTTTGTGGAACCGGTCAAGGAAGAAAGGAATGTCTTTGCCTAGATAAAGGCTCTATTAGATGTGTGCGGCGACATATCATTGAAGCCAGAGAGAGTTTGGTTGAAACTATTGGATATGAAAGGTTTATGGAGCTAGGGTTATGTGAGATGGGGGAGGAAGTTGCGAGTTTATGGACAGAGGAAGAAGAAGATCTCTTTCACAAGGTTGTATACTCCAATCCTTTCTCAGCGGGTCGTGACTTCTGGAAGCAATTAAAGGGAACGTTTCCTTCAAGAACCATGAAGGAGTTGGTTAGCTACTACTTCAATGTCTTCATCTTGCGGAGACGGGGTATTCAGAATCGGTTCAAAGCCCTAGATGTTGACAGTGATGATGACGAGTGGCAAGTTGAATACAACATTTTTAACAGCACCAAATCTTTAGATGAGGAAGACAACAATGGAAATCGCTCCTCATATGAAGATAACGAGGAAGAAGAAGAAACCAGCAGCAATGATGATGATGAAGAAGAAGAAGAGGAAGACGACTCATCAAGTAACGATGCTCATTGTGTAGATACGGATAAGGCTTCAAGAGACGGTTTTGGTGAAGAAGTAAATGTGGAAGACGACTCATGTATGTCCTTCGAGTTACAAGACTCCAACTTGATCTTCAGTCACAACCCAATCAAAAACAGAGAGTGCCACAGATCTGGTGAAGATTCATATTCATTTGATGATCAGAGATTCACATCAGATTGTTGGAACAAGAACAACGATCTACTACCAACTTCAAACATTATTGAGGAGATATTTGGTCAAGACGATTGGGGAGATAAAGATGATAATAACTTGAAGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

450

Amino Acids

51.86

Weight (kDa)

4.45

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13880 AT1G13880 AT1G13880 AT2G03470 AT2G03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 717
AciI CCGC 4 cut(s) 392, 574, 737, 829
AclI AACGTT 1 cut(s) 770
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 48, 1144
AgeI ACCGGT 2 cut(s) 227, 518
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
AluBI AGCT 5 cut(s) 67, 101, 469, 640, 804
AluI AGCT 5 cut(s) 67, 101, 469, 640, 804
Alw26I GTCTC 3 cut(s) 170, 826, 1077
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 996
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AsiGI ACCGGT 2 cut(s) 227, 518
Asp700I GAANNNNTTC 3 cut(s) 102, 420, 851
AspA2I CCTAGG 1 cut(s) 356
AsuHPI GGTGA 3 cut(s) 298, 1106, 1214
AvaI CYCGRG 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 479, 512
BbsI GAAGAC 5 cut(s) 140, 811, 945, 1035, 1119
BbvI GCAGC 1 cut(s) 1008
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 2 cut(s) 427, 1225
BcoDI GTCTC 3 cut(s) 170, 826, 1077
BfaI CTAG 4 cut(s) 357, 548, 641, 863
BglII AGATCT 3 cut(s) 274, 697, 1196
BisI GCNGC 2 cut(s) 575, 997
BlnI CCTAGG 1 cut(s) 356
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 2 cut(s) 576, 998
Bme1390I CCNGG 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 13, 24, 184, 1039
BpiI GAAGAC 5 cut(s) 140, 811, 945, 1035, 1119
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 183
BsaBI GATNNNNATC 2 cut(s) 198, 1237
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 2 cut(s) 227, 518
BsaXI ACNNNNNCTCC 4 cut(s) 629, 659, 823, 853
Bse118I RCCGGY 2 cut(s) 227, 518
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 2 cut(s) 52, 1006
Bse8I GATNNNNATC 2 cut(s) 198, 1237
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 356
BseJI GATNNNNATC 2 cut(s) 198, 1237
BseMI GCAATG 2 cut(s) 52, 1006
BseMII CTCAG 3 cut(s) 263, 281, 747
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 949, 1307
BseXI GCAGC 1 cut(s) 1008
BshTI ACCGGT 2 cut(s) 227, 518
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 228, 519
BsmAI GTCTC 3 cut(s) 170, 826, 1077
BsmBI CGTCTC 2 cut(s) 826, 1077
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 401
Bsp143I GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 4 cut(s) 392, 574, 737, 829
BspCNI CTCAG 3 cut(s) 262, 280, 746
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 170
BsrDI GCAATG 2 cut(s) 52, 1006
BsrFI RCCGGY 2 cut(s) 227, 518
BsrI ACTGG 1 cut(s) 317
BssAI RCCGGY 2 cut(s) 227, 518
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
BssNAI GTATAC 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 356
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 875, 1088
Bst6I CTCTTC 3 cut(s) 24, 411, 1017
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 7 cut(s) 51, 68, 249, 267, 447, 457, 733
BstKTI GATC 8 cut(s) 157, 277, 430, 700, 1158, 1199, 1228, 1267
BstMAI GTCTC 3 cut(s) 170, 826, 1077
BstMBI GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 1008
BstV2I GAAGAC 5 cut(s) 140, 811, 945, 1035, 1119
BstX2I RGATCY 4 cut(s) 154, 274, 697, 1196
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstYI RGATCY 4 cut(s) 154, 274, 697, 1196
BstZ17I GTATAC 1 cut(s) 718
BtsIMutI CAGTG 2 cut(s) 324, 880
Cac8I GCNNGC 1 cut(s) 57
Cfr10I RCCGGY 2 cut(s) 227, 518
CspAI ACCGGT 2 cut(s) 227, 518
CviAII CATG 4 cut(s) 56, 116, 787, 1122
DdeI CTNAG 7 cut(s) 51, 68, 249, 267, 447, 457, 733
DpnI GATC 8 cut(s) 156, 276, 429, 699, 1157, 1198, 1227, 1266
DpnII GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 3 cut(s) 24, 411, 1017
EarI CTCTTC 3 cut(s) 24, 411, 1017
Eco130I CCWWGG 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 48, 1144
Eco88I CYCGRG 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 2 cut(s) 826, 1077
FaeI CATG 4 cut(s) 59, 119, 790, 1125
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 440, 472
FatI CATG 4 cut(s) 55, 115, 786, 1121
FauI CCCGC 1 cut(s) 730
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 2 cut(s) 427, 1225
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 2 cut(s) 575, 997
Fsp4HI GCNGC 2 cut(s) 575, 997
FspBI CTAG 4 cut(s) 357, 548, 641, 863
GluI GCNGC 2 cut(s) 575, 997
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 2 cut(s) 228, 519
Hin1II CATG 4 cut(s) 59, 119, 790, 1125
HincII GTYRAC 2 cut(s) 208, 871
HindII GTYRAC 2 cut(s) 208, 871
HpaII CCGG 2 cut(s) 228, 519
HphI GGTGA 3 cut(s) 298, 1106, 1214
Hpy166II GTNNAC 4 cut(s) 186, 208, 718, 871
Hpy188I TCNGA 9 cut(s) 159, 274, 301, 436, 499, 505, 846, 1230, 1243
Hpy188III TCNNGA 9 cut(s) 239, 255, 401, 425, 743, 751, 780, 1080, 1307
Hpy8I GTNNAC 4 cut(s) 186, 208, 718, 871
HpyAV CCTTC 5 cut(s) 455, 784, 786, 1141, 1336
HpyCH4III ACNGT 2 cut(s) 875, 1088
HpyCH4IV ACGT 3 cut(s) 182, 204, 770
HpyCH4V TGCA 4 cut(s) 37, 45, 59, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 7 cut(s) 51, 68, 249, 267, 447, 457, 733
HpySE526I ACGT 3 cut(s) 182, 204, 770
Hsp92II CATG 4 cut(s) 59, 119, 790, 1125
Ksp22I TGATCA 2 cut(s) 427, 1225
Kzo9I GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
LmnI GCTCC 2 cut(s) 637, 962
Lsp1109I GCAGC 1 cut(s) 1008
LweI GCATC 4 cut(s) 13, 24, 184, 1039
MaeI CTAG 4 cut(s) 357, 548, 641, 863
MaeII ACGT 3 cut(s) 182, 204, 770
MaeIII GTNAC 6 cut(s) 71, 259, 743, 1043, 1137, 1163
MalI GATC 8 cut(s) 156, 276, 429, 699, 1157, 1198, 1227, 1266
MboI GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
MflI RGATCY 4 cut(s) 154, 274, 697, 1196
MluCI AATT 2 cut(s) 89, 758
MlyI GAGTC 5 cut(s) 259, 494, 1028, 1112, 1139
MmeI TCCRAC 2 cut(s) 1173, 1229
MroXI GAANNNNTTC 3 cut(s) 102, 420, 851
MseI TTAA 3 cut(s) 8, 761, 912
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 2 cut(s) 228, 519
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeI CATATG 1 cut(s) 964
NdeII GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
NlaIII CATG 4 cut(s) 59, 119, 790, 1125
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 259, 743, 1163
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PdmI GAANNNNTTC 3 cut(s) 102, 420, 851
PfeI GAWTC 7 cut(s) 175, 245, 346, 421, 847, 1208, 1233
PflFI GACNNNGTC 1 cut(s) 268
PinAI ACCGGT 2 cut(s) 227, 518
PkrI GCNGC 2 cut(s) 576, 998
PleI GAGTC 5 cut(s) 259, 494, 1028, 1112, 1139
PpsI GAGTC 5 cut(s) 259, 494, 1028, 1112, 1139
Ppu21I YACGTR 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 517
PsuI RGATCY 4 cut(s) 154, 274, 697, 1196
PsyI GACNNNGTC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 8, 761, 912
SatI GCNGC 2 cut(s) 575, 997
Sau3AI GATC 8 cut(s) 154, 274, 427, 697, 1155, 1196, 1225, 1264
SchI GAGTC 5 cut(s) 259, 494, 1028, 1112, 1139
ScrFI CCNGG 1 cut(s) 310
SfaNI GCATC 4 cut(s) 13, 24, 184, 1039
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 89, 758
SsiI CCGC 4 cut(s) 392, 574, 737, 829
SspMI CTAG 4 cut(s) 357, 548, 641, 863
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 875, 1088
TaiI ACGT 3 cut(s) 185, 207, 773
TaqI TCGA 2 cut(s) 442, 1134
TasI AATT 2 cut(s) 89, 758
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 7 cut(s) 175, 245, 346, 421, 847, 1208, 1233
Tru1I TTAA 3 cut(s) 8, 761, 912
Tru9I TTAA 3 cut(s) 8, 761, 912
TscAI CASTG 2 cut(s) 324, 880
TseFI GTSAC 3 cut(s) 259, 743, 1163
TseI GCWGC 1 cut(s) 996
Tsp45I GTSAC 3 cut(s) 259, 743, 1163
TspDTI ATGAA 8 cut(s) 359, 639, 803, 811, 981, 1026, 1200, 1206
TspGWI ACGGA 1 cut(s) 1082
TspRI CASTG 2 cut(s) 324, 880
Tth111I GACNNNGTC 1 cut(s) 268
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 2 cut(s) 601, 793
XmaJI CCTAGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 3 cut(s) 102, 420, 851
XspI CTAG 4 cut(s) 357, 548, 641, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.