Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020824

Physical Location & Seq

Genomic Coordinates Forward (+)

8006064 .. 8007465

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAAGAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTCCCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTATCTAAGACCAGATCTCAAAAGAGGCAATTTTACTGAAGAAGAAGATGAACTCATCATCAAGCTCCATAGCTTGCTCGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACAGATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTCAGCCGTGGGATTGATCCAAACTCTCACCGTCTGATCAACGAATCCGTCGTGTCTCCGTCGTCTCTTCAAAACGATGTCGTTGAGACTATACATCTTGATTTCTCTGGACCGGTTAAACCGGAACCGGTGCGTGAAGAGATTGGTATGGTTAATAATTGTGAGAGTAGTGGAACGACGTCGGAGAAGGATTATGGGAACGAGGAAGATTGGGTGTTGAATTTGGAACTCTCTGTTGGACCGAGTTATCGGTACGAGTCGACTCGGAAAGTGAGTGTTGTTGACTCGGCTGAGTCGACTCGACGGTGGGGTTCCGAGTTGTTTGGAGCTCATGAGAGTGATGCGGTGTGTTTGTGTTGTCGGATTGGGTTGTTTCGTAATGAGTCGTGTCGGAATTGTCGGGTTTCTGATGTTAGAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.35

Weight (kDa)

7.55

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 39	7.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22640 AT1G22640 AT1G22640
rosa_chinensis	RchiOBHm_Chr2g0142681
rosa_wichuraiana	Rw2G010180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	608, 644
AccII	CGCG	1 cut(s)	126
AciI	CCGC	2 cut(s)	129, 692
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	1 cut(s)	602
AgeI	ACCGGT	2 cut(s)	460, 475
AgsI	TTSAA	2 cut(s)	419, 568
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	8 cut(s)	29, 47, 70, 241, 249, 278, 346, 677
AluI	AGCT	8 cut(s)	29, 47, 70, 241, 249, 278, 346, 677
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	408, 417, 428
AlwI	GGATC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	568
AsiGI	ACCGGT	2 cut(s)	460, 475
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	458, 587
AsuHPI	GGTGA	3 cut(s)	3, 110, 368
AvaII	GGWCC	2 cut(s)	458, 587
BanII	GRGCYC	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	408, 417, 428
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	19, 129
BlsI	GCNGC	2 cut(s)	20, 130
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	458, 587
BmgT120I	GGNCC	2 cut(s)	458, 587
BmiI	GGNNCC	2 cut(s)	474, 661
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	3 cut(s)	460, 469, 475
Bse118I	RCCGGY	2 cut(s)	460, 475
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	84, 177
BseMII	CTCAG	2 cut(s)	364, 630
BseXI	GCAGC	1 cut(s)	5
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	126
BshTI	ACCGGT	2 cut(s)	460, 475
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	3 cut(s)	461, 470, 476
BsmAI	GTCTC	3 cut(s)	408, 417, 428
BsmBI	CGTCTC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
BspACI	CCGC	2 cut(s)	129, 692
BspCNI	CTCAG	2 cut(s)	363, 631
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	474, 661
BspPI	GGATC	1 cut(s)	359
BsrFI	RCCGGY	2 cut(s)	460, 475
BssAI	RCCGGY	2 cut(s)	460, 475
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	98, 380, 654
Bst6I	CTCTTC	2 cut(s)	420, 480
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	110, 251
BstDEI	CTNAG	3 cut(s)	182, 350, 639
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	84, 177
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	7 cut(s)	11, 67, 116, 193, 312, 367, 387
BstMAI	GTCTC	3 cut(s)	408, 417, 428
BstMBI	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	84, 177
Cac8I	GCNNGC	2 cut(s)	110, 251
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	460, 475
Cfr13I	GGNCC	2 cut(s)	458, 587
Csp6I	GTAC	1 cut(s)	601
CspAI	ACCGGT	2 cut(s)	460, 475
CviAII	CATG	3 cut(s)	15, 34, 680
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	3 cut(s)	182, 350, 639
DpnI	GATC	7 cut(s)	10, 66, 115, 192, 311, 366, 386
DpnII	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
Eam1104I	CTCTTC	2 cut(s)	420, 480
EarI	CTCTTC	2 cut(s)	420, 480
Ecl136II	GAGCTC	1 cut(s)	677
Eco24I	GRGCYC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	458, 587
Eco53kI	GAGCTC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	679
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	3 cut(s)	18, 37, 683
FaiI	YATR	8 cut(s)	16, 35, 246, 333, 440, 497, 543, 681
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	3 cut(s)	14, 33, 679
FbaI	TGATCA	1 cut(s)	384
FblI	GTMKAC	2 cut(s)	608, 644
Fnu4HI	GCNGC	2 cut(s)	19, 129
FokI	GGATG	2 cut(s)	71, 184
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	2 cut(s)	19, 129
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	2 cut(s)	19, 129
GsaI	CCCAGC	1 cut(s)	282
HapII	CCGG	3 cut(s)	461, 470, 476
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	18, 37, 683
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	3 cut(s)	609, 631, 645
HindII	GTYRAC	3 cut(s)	609, 631, 645
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	7 cut(s)	392, 605, 610, 632, 641, 646, 731
HpaII	CCGG	3 cut(s)	461, 470, 476
HphI	GGTGA	3 cut(s)	3, 110, 368
Hpy166II	GTNNAC	4 cut(s)	92, 609, 631, 645
Hpy188I	TCNGA	7 cut(s)	384, 532, 615, 664, 711, 741, 757
Hpy188III	TCNNGA	5 cut(s)	313, 337, 446, 456, 680
Hpy8I	GTNNAC	4 cut(s)	92, 609, 631, 645
Hpy99I	CGWCG	5 cut(s)	401, 412, 529, 532, 654
HpyAV	CCTTC	2 cut(s)	95, 529
HpyCH4III	ACNGT	3 cut(s)	98, 380, 654
HpyCH4IV	ACGT	1 cut(s)	527
HpyF3I	CTNAG	3 cut(s)	182, 350, 639
HpySE526I	ACGT	1 cut(s)	527
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	18, 37, 683
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
LmnI	GCTCC	3 cut(s)	44, 246, 674
Lsp1109I	GCAGC	1 cut(s)	5
LweI	GCATC	1 cut(s)	679
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	7 cut(s)	10, 66, 115, 192, 311, 366, 386
MboI	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	5 cut(s)	175, 205, 505, 568, 742
MlyI	GAGTC	6 cut(s)	604, 614, 626, 640, 650, 740
MmeI	TCCRAC	4 cut(s)	510, 565, 689, 719
MnlI	CCTC	4 cut(s)	132, 194, 333, 544
MseI	TTAA	3 cut(s)	272, 465, 501
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	461, 470, 476
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
NlaIII	CATG	3 cut(s)	18, 37, 683
NlaIV	GGNNCC	2 cut(s)	474, 661
NmeAIII	GCCGAG	1 cut(s)	614
PagI	TCATGA	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 641
PfeI	GAWTC	1 cut(s)	392
PinAI	ACCGGT	2 cut(s)	460, 475
PkrI	GCNGC	2 cut(s)	20, 130
PleI	GAGTC	6 cut(s)	604, 613, 626, 640, 649, 739
PpsI	GAGTC	6 cut(s)	604, 613, 626, 640, 649, 739
Psp124BI	GAGCTC	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	474, 661
PspPI	GGNCC	2 cut(s)	458, 587
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	679
SalI	GTCGAC	2 cut(s)	607, 643
SaqAI	TTAA	3 cut(s)	272, 465, 501
SatI	GCNGC	2 cut(s)	19, 129
Sau3AI	GATC	7 cut(s)	8, 64, 113, 190, 309, 364, 384
Sau96I	GGNCC	2 cut(s)	458, 587
SchI	GAGTC	6 cut(s)	604, 614, 626, 640, 650, 740
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	679
SinI	GGWCC	2 cut(s)	458, 587
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	5 cut(s)	175, 205, 505, 568, 742
SsiI	CCGC	2 cut(s)	129, 692
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	98, 380, 654
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	3 cut(s)	608, 644, 649
TaqII	GACCGA	1 cut(s)	604
TasI	AATT	5 cut(s)	175, 205, 505, 568, 742
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	272, 465, 501
Tru9I	TTAA	3 cut(s)	272, 465, 501
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	3 cut(s)	50, 188, 240
TspGWI	ACGGA	3 cut(s)	77, 385, 396
VpaK11BI	GGWCC	2 cut(s)	458, 587
XapI	RAATTY	1 cut(s)	568
XmiI	GTMKAC	2 cut(s)	608, 644
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.