Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0020824

Physical Location & Seq

Genomic Coordinates Forward (+)

10298291 .. 10299112

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGGGGAAATTTGGGAAGATCAATAAGCCTGTACGGTTTCCTGAAATTCTGGACTTGGCGCCTTATATGAGTGGTACAAGTGATAGAACAAATGGTTCAAGATTGATGACAGCACGGAAAATTATTGGCAGGATATTTGTCTACTTATTGGTGTACCATAGAGTCCTATCGATCTCTTTAAGGGTTTGCATGTGTTTACTTACACATGTTATTGATCTGACTATTGTGTACTGGCCGGCTGCAGGGTTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTTAAGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008283 GO:0009628 GO:0009651 GO:0009791 GO:0009908 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0047484 GO:0048364 GO:0048366 GO:0048367 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0080134 GO:0090567 GO:0099402 GO:0101005 GO:0140096 GO:1901000 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

10.24

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22640 AT1G22640 AT1G22640
rosa_chinensis	RchiOBHm_Chr2g0142681
rosa_wichuraiana	Rw2G010180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	11, 48
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	4 cut(s)	36, 79, 158, 233
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	11, 48
AspLEI	GCGC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	21, 174, 217
BspANI	GGCC	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	61
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	3 cut(s)	21, 174, 217
BssNI	GRCGYC	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	24, 177, 220
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	21, 174, 217
BstNSI	RCATGY	2 cut(s)	196, 212
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	4 cut(s)	35, 78, 157, 232
CviAII	CATG	2 cut(s)	193, 209
CviJI	RGCY	4 cut(s)	31, 238, 242, 318
CviKI_1	RGCY	4 cut(s)	31, 238, 242, 318
CviQI	GTAC	4 cut(s)	35, 78, 157, 232
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	3 cut(s)	23, 176, 219
DpnII	GATC	3 cut(s)	21, 174, 217
EaeI	YGGCCR	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaeI	CATG	2 cut(s)	196, 212
FaiI	YATR	5 cut(s)	69, 71, 162, 194, 210
FatI	CATG	2 cut(s)	192, 208
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	196, 212
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	4 cut(s)	145, 157, 200, 232
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	44, 53, 102
Hpy8I	GTNNAC	4 cut(s)	145, 157, 200, 232
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	192, 245, 273
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	196, 212
HspAI	GCGC	1 cut(s)	62
KasI	GGCGCC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	21, 174, 217
LpnPI	CCDG	9 cut(s)	38, 45, 57, 118, 220, 231, 252, 259, 315
Lsp1109I	GCAGC	1 cut(s)	229
MalI	GATC	3 cut(s)	23, 176, 219
MboI	GATC	3 cut(s)	21, 174, 217
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	3 cut(s)	11, 48, 123
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	249, 308
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	2 cut(s)	182, 309
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	240
NarI	GGCGCC	1 cut(s)	62
NdeII	GATC	3 cut(s)	21, 174, 217
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	196, 212
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	2 cut(s)	196, 212
PciI	ACATGT	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	173
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	36, 79, 158, 233
RsaNI	GTAC	4 cut(s)	35, 78, 157, 232
SaqAI	TTAA	2 cut(s)	182, 309
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	21, 174, 217
SchI	GAGTC	1 cut(s)	174
SetI	ASST	2 cut(s)	260, 278
SfcI	CTRYAG	1 cut(s)	243
SfoI	GGCGCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	11, 48, 123
SspDI	GGCGCC	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	11, 48, 123
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	182, 309
Tru9I	TTAA	2 cut(s)	182, 309
TseI	GCWGC	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	11, 48
XceI	RCATGY	2 cut(s)	196, 212
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.