Contains the following InterPro domains Ribosomal protein L9 RNase H1, N-terminal (InterPro IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro IPR012337), Ribonuclease H (InterPro IPR002156)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24090 AT5G51080 AT5G51080 AT5G51080 |
| prunus_persica | Prupe.1G259700_v2.0.a1 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 288, 354 |
| AccII | CGCG | 1 cut(s) | 22 |
| AciI | CCGC | 2 cut(s) | 707, 1004 |
| AclWI | GGATC | 2 cut(s) | 328, 587 |
| AcsI | RAATTY | 2 cut(s) | 282, 988 |
| AcuI | CTGAAG | 3 cut(s) | 420, 537, 558 |
| AcyI | GRCGYC | 1 cut(s) | 246 |
| AfaI | GTAC | 4 cut(s) | 502, 711, 912, 981 |
| AflII | CTTAAG | 1 cut(s) | 47 |
| AgsI | TTSAA | 5 cut(s) | 108, 409, 445, 612, 811 |
| AjnI | CCWGG | 1 cut(s) | 483 |
| AluBI | AGCT | 9 cut(s) | 60, 131, 434, 494, 578, 607, 732, 865, 922 |
| AluI | AGCT | 9 cut(s) | 60, 131, 434, 494, 578, 607, 732, 865, 922 |
| Alw21I | GWGCWC | 1 cut(s) | 466 |
| Alw26I | GTCTC | 5 cut(s) | 18, 518, 530, 695, 964 |
| AlwI | GGATC | 2 cut(s) | 328, 587 |
| ApeKI | GCWGC | 3 cut(s) | 701, 704, 779 |
| ApoI | RAATTY | 2 cut(s) | 282, 988 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 236, 268 |
| AspA2I | CCTAGG | 1 cut(s) | 802 |
| AspLEI | GCGC | 2 cut(s) | 22, 701 |
| AsuC2I | CCSGG | 1 cut(s) | 687 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 866 |
| AvrII | CCTAGG | 1 cut(s) | 802 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 924, 956 |
| BbsI | GAAGAC | 1 cut(s) | 1025 |
| Bbv12I | GWGCWC | 1 cut(s) | 466 |
| BbvI | GCAGC | 3 cut(s) | 713, 716, 791 |
| BccI | CCATC | 1 cut(s) | 631 |
| BciT130I | CCWGG | 1 cut(s) | 485 |
| BciVI | GTATCC | 1 cut(s) | 353 |
| BcnI | CCSGG | 1 cut(s) | 687 |
| BcoDI | GTCTC | 5 cut(s) | 18, 518, 530, 695, 964 |
| BfaI | CTAG | 1 cut(s) | 803 |
| BfmI | CTRYAG | 2 cut(s) | 126, 154 |
| BfrI | CTTAAG | 1 cut(s) | 47 |
| BfuI | GTATCC | 1 cut(s) | 353 |
| BisI | GCNGC | 3 cut(s) | 702, 705, 780 |
| BlnI | CCTAGG | 1 cut(s) | 802 |
| BlsI | GCNGC | 3 cut(s) | 703, 706, 781 |
| Bme1390I | CCNGG | 2 cut(s) | 485, 687 |
| BmiI | GGNNCC | 2 cut(s) | 489, 621 |
| BmrFI | CCNGG | 2 cut(s) | 485, 687 |
| BmsI | GCATC | 2 cut(s) | 680, 991 |
| BpiI | GAAGAC | 1 cut(s) | 1025 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 515, 547 |
| BpuEI | CTTGAG | 2 cut(s) | 160, 297 |
| BpuMI | CCSGG | 1 cut(s) | 687 |
| BsaHI | GRCGYC | 1 cut(s) | 246 |
| BsaI | GGTCTC | 1 cut(s) | 695 |
| BsaJI | CCNNGG | 3 cut(s) | 36, 77, 802 |
| BsaWI | WCCGGW | 1 cut(s) | 340 |
| Bse3DI | GCAATG | 1 cut(s) | 30 |
| BseBI | CCWGG | 1 cut(s) | 485 |
| BseDI | CCNNGG | 3 cut(s) | 36, 77, 802 |
| BseGI | GGATG | 1 cut(s) | 1012 |
| BseMI | GCAATG | 1 cut(s) | 30 |
| BseMII | CTCAG | 3 cut(s) | 372, 546, 711 |
| BseXI | GCAGC | 3 cut(s) | 713, 716, 791 |
| Bsh1236I | CGCG | 1 cut(s) | 22 |
| BsiHKAI | GWGCWC | 1 cut(s) | 466 |
| BsiSI | CCGG | 3 cut(s) | 341, 687, 696 |
| BslFI | GGGAC | 1 cut(s) | 54 |
| BsmAI | GTCTC | 5 cut(s) | 18, 518, 530, 695, 964 |
| BsmBI | CGTCTC | 1 cut(s) | 530 |
| BsmFI | GGGAC | 1 cut(s) | 54 |
| Bso31I | GGTCTC | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 1 cut(s) | 466 |
| Bsp1407I | TGTACA | 1 cut(s) | 500 |
| Bsp143I | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| BspACI | CCGC | 2 cut(s) | 707, 1004 |
| BspCNI | CTCAG | 3 cut(s) | 373, 545, 712 |
| BspFNI | CGCG | 1 cut(s) | 22 |
| BspLI | GGNNCC | 2 cut(s) | 489, 621 |
| BspPI | GGATC | 2 cut(s) | 328, 587 |
| BspTI | CTTAAG | 1 cut(s) | 47 |
| BspTNI | GGTCTC | 1 cut(s) | 695 |
| BsrDI | GCAATG | 1 cut(s) | 30 |
| BsrGI | TGTACA | 1 cut(s) | 500 |
| BssECI | CCNNGG | 3 cut(s) | 36, 77, 802 |
| BssMI | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| BssNI | GRCGYC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 2 cut(s) | 36, 802 |
| Bst2UI | CCWGG | 1 cut(s) | 485 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 217, 505, 668 |
| Bst6I | CTCTTC | 1 cut(s) | 400 |
| BstACI | GRCGYC | 1 cut(s) | 246 |
| BstAFI | CTTAAG | 1 cut(s) | 47 |
| BstAUI | TGTACA | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 2 cut(s) | 492, 1014 |
| BstDEI | CTNAG | 4 cut(s) | 381, 532, 720, 983 |
| BstDSI | CCRYGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 1 cut(s) | 1012 |
| BstFNI | CGCG | 1 cut(s) | 22 |
| BstHHI | GCGC | 2 cut(s) | 22, 701 |
| BstKTI | GATC | 7 cut(s) | 56, 182, 323, 337, 565, 595, 972 |
| BstMAI | GTCTC | 5 cut(s) | 18, 518, 530, 695, 964 |
| BstMBI | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1022 |
| BstNI | CCWGG | 1 cut(s) | 485 |
| BstSCI | CCNGG | 2 cut(s) | 483, 685 |
| BstSFI | CTRYAG | 2 cut(s) | 126, 154 |
| BstUI | CGCG | 1 cut(s) | 22 |
| BstV1I | GCAGC | 3 cut(s) | 713, 716, 791 |
| BstV2I | GAAGAC | 1 cut(s) | 1025 |
| BstX2I | RGATCY | 1 cut(s) | 320 |
| BstYI | RGATCY | 1 cut(s) | 320 |
| BsuI | GTATCC | 1 cut(s) | 353 |
| BtgI | CCRYGG | 1 cut(s) | 77 |
| BtsCI | GGATG | 1 cut(s) | 1012 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 2 cut(s) | 492, 1014 |
| CfoI | GCGC | 2 cut(s) | 22, 701 |
| CseI | GACGC | 2 cut(s) | 254, 737 |
| Csp6I | GTAC | 4 cut(s) | 501, 710, 911, 980 |
| CviAII | CATG | 6 cut(s) | 17, 114, 474, 791, 905, 977 |
| CviQI | GTAC | 4 cut(s) | 501, 710, 911, 980 |
| DdeI | CTNAG | 4 cut(s) | 381, 532, 720, 983 |
| DpnI | GATC | 7 cut(s) | 55, 181, 322, 336, 564, 594, 971 |
| DpnII | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| DraI | TTTAAA | 2 cut(s) | 120, 993 |
| Eam1104I | CTCTTC | 1 cut(s) | 400 |
| EarI | CTCTTC | 1 cut(s) | 400 |
| Eco130I | CCWWGG | 2 cut(s) | 36, 802 |
| Eco31I | GGTCTC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 3 cut(s) | 420, 537, 558 |
| EcoRII | CCWGG | 1 cut(s) | 483 |
| EcoT14I | CCWWGG | 2 cut(s) | 36, 802 |
| ErhI | CCWWGG | 2 cut(s) | 36, 802 |
| Esp3I | CGTCTC | 1 cut(s) | 530 |
| FaeI | CATG | 6 cut(s) | 20, 117, 477, 794, 908, 980 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 233, 265, 552, 584 |
| FaqI | GGGAC | 1 cut(s) | 54 |
| FatI | CATG | 6 cut(s) | 16, 113, 473, 790, 904, 976 |
| Fnu4HI | GCNGC | 3 cut(s) | 702, 705, 780 |
| FokI | GGATG | 1 cut(s) | 1019 |
| Fsp4HI | GCNGC | 3 cut(s) | 702, 705, 780 |
| FspBI | CTAG | 1 cut(s) | 803 |
| GlaI | GCGC | 2 cut(s) | 21, 700 |
| GluI | GCNGC | 3 cut(s) | 702, 705, 780 |
| HapII | CCGG | 3 cut(s) | 341, 687, 696 |
| HgaI | GACGC | 2 cut(s) | 254, 737 |
| HhaI | GCGC | 2 cut(s) | 22, 701 |
| Hin1I | GRCGYC | 1 cut(s) | 246 |
| Hin1II | CATG | 6 cut(s) | 20, 117, 477, 794, 908, 980 |
| Hin6I | GCGC | 2 cut(s) | 20, 699 |
| HinP1I | GCGC | 2 cut(s) | 20, 699 |
| HindIII | AAGCTT | 1 cut(s) | 605 |
| HinfI | GANTC | 2 cut(s) | 150, 857 |
| HpaII | CCGG | 3 cut(s) | 341, 687, 696 |
| HphI | GGTGA | 2 cut(s) | 281, 866 |
| Hpy166II | GTNNAC | 1 cut(s) | 901 |
| Hpy188I | TCNGA | 5 cut(s) | 264, 439, 517, 535, 640 |
| Hpy188III | TCNNGA | 2 cut(s) | 177, 1037 |
| Hpy8I | GTNNAC | 1 cut(s) | 901 |
| HpyAV | CCTTC | 5 cut(s) | 114, 259, 582, 889, 1034 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 217, 505, 668 |
| HpyCH4V | TGCA | 4 cut(s) | 671, 779, 877, 948 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1022 |
| HpyF3I | CTNAG | 4 cut(s) | 381, 532, 720, 983 |
| Hsp92I | GRCGYC | 1 cut(s) | 246 |
| Hsp92II | CATG | 6 cut(s) | 20, 117, 477, 794, 908, 980 |
| HspAI | GCGC | 2 cut(s) | 20, 699 |
| Kzo9I | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| LmnI | GCTCC | 5 cut(s) | 487, 499, 619, 729, 927 |
| Lsp1109I | GCAGC | 3 cut(s) | 713, 716, 791 |
| LweI | GCATC | 2 cut(s) | 680, 991 |
| MaeI | CTAG | 1 cut(s) | 803 |
| MaeIII | GTNAC | 2 cut(s) | 830, 854 |
| MalI | GATC | 7 cut(s) | 55, 181, 322, 336, 564, 594, 971 |
| MboI | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| MboII | GAAGA | 7 cut(s) | 85, 315, 329, 387, 421, 530, 1025 |
| MflI | RGATCY | 1 cut(s) | 320 |
| MhlI | GDGCHC | 1 cut(s) | 466 |
| MluCI | AATT | 3 cut(s) | 282, 762, 988 |
| MlyI | GAGTC | 1 cut(s) | 851 |
| MmeI | TCCRAC | 1 cut(s) | 298 |
| MnlI | CCTC | 6 cut(s) | 184, 376, 541, 715, 901, 1045 |
| MseI | TTAA | 8 cut(s) | 48, 119, 192, 428, 797, 843, 882, 992 |
| MspA1I | CMGCKG | 1 cut(s) | 707 |
| MspCI | CTTAAG | 1 cut(s) | 47 |
| MspI | CCGG | 3 cut(s) | 341, 687, 696 |
| MspR9I | CCNGG | 2 cut(s) | 485, 687 |
| MvaI | CCWGG | 1 cut(s) | 485 |
| MvnI | CGCG | 1 cut(s) | 22 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1022 |
| NciI | CCSGG | 1 cut(s) | 687 |
| NdeII | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| NlaIII | CATG | 6 cut(s) | 20, 117, 477, 794, 908, 980 |
| NlaIV | GGNNCC | 2 cut(s) | 489, 621 |
| NmuCI | GTSAC | 1 cut(s) | 854 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 150 |
| PflFI | GACNNNGTC | 1 cut(s) | 541 |
| PfoI | TCCNGGA | 1 cut(s) | 483 |
| PkrI | GCNGC | 3 cut(s) | 703, 706, 781 |
| PleI | GAGTC | 1 cut(s) | 851 |
| PpsI | GAGTC | 1 cut(s) | 851 |
| PsiI | TTATAA | 2 cut(s) | 288, 354 |
| Psp6I | CCWGG | 1 cut(s) | 483 |
| PspGI | CCWGG | 1 cut(s) | 483 |
| PspN4I | GGNNCC | 2 cut(s) | 489, 621 |
| PsuI | RGATCY | 1 cut(s) | 320 |
| PsyI | GACNNNGTC | 1 cut(s) | 541 |
| RsaI | GTAC | 4 cut(s) | 502, 711, 912, 981 |
| RsaNI | GTAC | 4 cut(s) | 501, 710, 911, 980 |
| SaqAI | TTAA | 8 cut(s) | 48, 119, 192, 428, 797, 843, 882, 992 |
| SatI | GCNGC | 3 cut(s) | 702, 705, 780 |
| Sau3AI | GATC | 7 cut(s) | 53, 179, 320, 334, 562, 592, 969 |
| SchI | GAGTC | 1 cut(s) | 851 |
| ScrFI | CCNGG | 2 cut(s) | 485, 687 |
| SduI | GDGCHC | 1 cut(s) | 466 |
| SfaNI | GCATC | 2 cut(s) | 680, 991 |
| SfcI | CTRYAG | 2 cut(s) | 126, 154 |
| SmiI | ATTTAAAT | 1 cut(s) | 993 |
| SmlI | CTYRAG | 3 cut(s) | 47, 175, 312 |
| SmoI | CTYRAG | 3 cut(s) | 47, 175, 312 |
| Sse9I | AATT | 3 cut(s) | 282, 762, 988 |
| SsiI | CCGC | 2 cut(s) | 707, 1004 |
| SspI | AATATT | 1 cut(s) | 841 |
| SspMI | CTAG | 1 cut(s) | 803 |
| StyD4I | CCNGG | 2 cut(s) | 483, 685 |
| StyI | CCWWGG | 2 cut(s) | 36, 802 |
| SwaI | ATTTAAAT | 1 cut(s) | 993 |
| TaaI | ACNGT | 4 cut(s) | 8, 217, 505, 668 |
| TaqI | TCGA | 1 cut(s) | 657 |
| TasI | AATT | 3 cut(s) | 282, 762, 988 |
| TatI | WGTACW | 2 cut(s) | 500, 979 |
| TfiI | GAWTC | 1 cut(s) | 150 |
| Tru1I | TTAA | 8 cut(s) | 48, 119, 192, 428, 797, 843, 882, 992 |
| Tru9I | TTAA | 8 cut(s) | 48, 119, 192, 428, 797, 843, 882, 992 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 1 cut(s) | 854 |
| TseI | GCWGC | 3 cut(s) | 701, 704, 779 |
| Tsp45I | GTSAC | 1 cut(s) | 854 |
| TspDTI | ATGAA | 4 cut(s) | 15, 17, 99, 152 |
| TspGWI | ACGGA | 2 cut(s) | 66, 1019 |
| TspRI | CASTG | 1 cut(s) | 385 |
| Tth111I | GACNNNGTC | 1 cut(s) | 541 |
| Vha464I | CTTAAG | 1 cut(s) | 47 |
| XapI | RAATTY | 2 cut(s) | 282, 988 |
| XmaJI | CCTAGG | 1 cut(s) | 802 |
| XspI | CTAG | 1 cut(s) | 803 |