Prupe.1G259700_v2.0.a1

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0020834
Physical Location & Seq
Forward (+)
26898551 .. 26901045
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G259700.1

Sequence Viewer

Length: 693 bp
ATGACGGTGACAAGGTTAATGAGATTGCTGCCAAAACTAACAACGACGAGACCTTCACTTTCTTCTTCATCTTTTCCATTAAAATGTTTATTTTCTTCCACATCATCATCATCACCGTCTTCGTCCAACGTCGTTTCAAGCACTGCTGCTGATGCTGTTGATCTTGGTGATGAAGAAGAAGAAGATGATGTACCCATCTACTCTAACCCAACTGCTGATTCGGCGGTTAAGCCCGTGATACCCACTCTTCTTCAGCCACGCGTTGTGGTCTACGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATTAAAGCAGACAAGTACAGGAAGATCAAATTCTGTTGCCTTCAATCGGTGACTGCTGAGCCTTATTTGAGATTGTGTGGTCTTGATCGAGAGGATGTTCTTCGTCGCTTTTTGTTTGTTGAAGGCCCGGGGCTATACCACCAAGGCTCTACTGCTGCACTGAAAGTATTGTCATACTTGCCTCTCCCTTACTCTGCTTTAAGCGCATTCAGGGTAATCCCAACTCCTCTGAGGGAGATTGTCTATGATTATGTTGCCAAACGGCGCTATGACATCTTCGGCAAGTCTGAAGATTGCTTAGTCTTGCAAGAGAAAGAGTTGCTGGAGCGTTTCATTGATAGGGAAGAGATAATGTATCGAGCTCGACCAGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

231

Amino Acids

25.88

Weight (kDa)

6.82

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24090 AT5G51080 AT5G51080 AT5G51080
prunus_persica Prupe.1G259700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 261
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 236, 624
AfaI GTAC 2 cut(s) 192, 332
AfiI CCNNNNNNNGG 2 cut(s) 301, 361
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 3 cut(s) 138, 359, 437
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AluBI AGCT 1 cut(s) 677
AluI AGCT 1 cut(s) 677
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 442
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 3 cut(s) 28, 146, 470
ApoI RAATTY 1 cut(s) 344
AspLEI GCGC 2 cut(s) 521, 582
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 443, 444
AsuHPI GGTGA 6 cut(s) 19, 105, 179, 316, 325, 376
AvaI CYCGRG 1 cut(s) 442
BanII GRGCYC 1 cut(s) 679
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 3 cut(s) 15, 133, 457
BccI CCATC 3 cut(s) 203, 269, 294
BceAI ACGGC 1 cut(s) 593
BcnI CCSGG 2 cut(s) 443, 444
BcoDI GTCTC 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 583
BisI GCNGC 3 cut(s) 29, 147, 471
BlpI GCTNAGC 1 cut(s) 372
BlsI GCNGC 3 cut(s) 30, 148, 472
Bme1390I CCNGG 2 cut(s) 443, 444
BmeT110I CYCGRG 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 440
BmrFI CCNGG 2 cut(s) 443, 444
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 659
Bpu1102I GCTNAGC 1 cut(s) 372
BpuMI CCSGG 2 cut(s) 443, 444
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 4 cut(s) 295, 442, 443, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 361
BseDI CCNNGG 4 cut(s) 295, 442, 443, 457
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 301, 361
BseMII CTCAG 2 cut(s) 363, 536
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 3 cut(s) 15, 133, 457
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 679
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 301, 361
BsmAI GTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 1 cut(s) 441
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 679
Bsp143I GATC 3 cut(s) 160, 339, 400
Bsp1720I GCTNAGC 1 cut(s) 372
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 364, 537
BspFNI CGCG 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 295, 442, 443, 457
BssMI GATC 3 cut(s) 160, 339, 400
BssT1I CCWWGG 2 cut(s) 295, 457
Bst4CI ACNGT 2 cut(s) 7, 117
Bst6I CTCTTC 2 cut(s) 252, 654
BstDEI CTNAG 3 cut(s) 372, 545, 613
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 2 cut(s) 521, 582
BstKTI GATC 3 cut(s) 163, 342, 403
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 160, 339, 400
BstMWI GCNNNNNNNGC 4 cut(s) 152, 221, 291, 518
BstSCI CCNGG 2 cut(s) 441, 442
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 15, 133, 457
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 141, 473
CfoI GCGC 2 cut(s) 521, 582
Cfr13I GGNCC 1 cut(s) 440
Cfr9I CCCGGG 1 cut(s) 442
Csp6I GTAC 2 cut(s) 191, 331
CviAII CATG 1 cut(s) 296
CviJI RGCY 7 cut(s) 232, 256, 376, 441, 448, 462, 677
CviKI_1 RGCY 7 cut(s) 232, 256, 376, 441, 448, 462, 677
CviQI GTAC 2 cut(s) 191, 331
DdeI CTNAG 3 cut(s) 372, 545, 613
DpnI GATC 3 cut(s) 162, 341, 402
DpnII GATC 3 cut(s) 160, 339, 400
Eam1104I CTCTTC 2 cut(s) 252, 654
EarI CTCTTC 2 cut(s) 252, 654
Ecl136II GAGCTC 1 cut(s) 677
Eco130I CCWWGG 2 cut(s) 295, 457
Eco24I GRGCYC 1 cut(s) 679
Eco31I GGTCTC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 677
Eco57I CTGAAG 2 cut(s) 236, 624
Eco88I CYCGRG 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 677
EcoT14I CCWWGG 2 cut(s) 295, 457
EcoT38I GRGCYC 1 cut(s) 679
ErhI CCWWGG 2 cut(s) 295, 457
FaeI CATG 1 cut(s) 299
FaiI YATR 6 cut(s) 297, 451, 490, 561, 567, 585
FatI CATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 29, 147, 471
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 679
Fsp4HI GCNGC 3 cut(s) 29, 147, 471
GlaI GCGC 2 cut(s) 520, 581
GluI GCNGC 3 cut(s) 29, 147, 471
GsuI CTGGAG 1 cut(s) 659
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 443
HhaI GCGC 2 cut(s) 521, 582
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 2 cut(s) 519, 580
HinP1I GCGC 2 cut(s) 519, 580
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 443
HphI GGTGA 6 cut(s) 19, 105, 179, 316, 325, 376
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 546, 604
Hpy188III TCNNGA 2 cut(s) 398, 404
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 3 cut(s) 49, 134, 423
HpyAV CCTTC 3 cut(s) 63, 365, 431
HpyCH4III ACNGT 2 cut(s) 7, 117
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 473, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 221, 291, 518
HpyF3I CTNAG 3 cut(s) 372, 545, 613
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 2 cut(s) 519, 580
Kzo9I GATC 3 cut(s) 160, 339, 400
LmnI GCTCC 1 cut(s) 640
LpnPI CCDG 4 cut(s) 319, 456, 511, 623
Lsp1109I GCAGC 3 cut(s) 15, 133, 457
LweI GCATC 1 cut(s) 142
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 7, 364
MalI GATC 3 cut(s) 162, 341, 402
MboI GATC 3 cut(s) 160, 339, 400
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 1 cut(s) 344
MluI ACGCGT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 293, 400, 507, 540, 552
MseI TTAA 6 cut(s) 17, 80, 228, 318, 515, 691
MslI CAYNNNNRTG 1 cut(s) 82
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 443, 444
Mva1269I GAATGC 1 cut(s) 521
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 4 cut(s) 152, 221, 291, 518
NciI CCSGG 2 cut(s) 443, 444
NcoI CCATGG 1 cut(s) 295
NdeII GATC 3 cut(s) 160, 339, 400
NlaIII CATG 1 cut(s) 299
NmuCI GTSAC 2 cut(s) 7, 364
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 30, 148, 472
Psp124BI GAGCTC 1 cut(s) 679
PspPI GGNCC 1 cut(s) 440
RsaI GTAC 2 cut(s) 192, 332
RsaNI GTAC 2 cut(s) 191, 331
RseI CAYNNNNRTG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 679
SaqAI TTAA 6 cut(s) 17, 80, 228, 318, 515, 691
SatI GCNGC 3 cut(s) 29, 147, 471
Sau3AI GATC 3 cut(s) 160, 339, 400
Sau96I GGNCC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 443, 444
SduI GDGCHC 1 cut(s) 679
SetI ASST 4 cut(s) 17, 55, 132, 679
SfaNI GCATC 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 344
SsiI CCGC 1 cut(s) 224
SstI GAGCTC 1 cut(s) 679
StyD4I CCNGG 2 cut(s) 441, 442
StyI CCWWGG 2 cut(s) 295, 457
TaaI ACNGT 2 cut(s) 7, 117
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 403, 673, 679
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 6 cut(s) 17, 80, 228, 318, 515, 691
Tru9I TTAA 6 cut(s) 17, 80, 228, 318, 515, 691
TscAI CASTG 2 cut(s) 148, 480
TseFI GTSAC 2 cut(s) 7, 364
TseI GCWGC 3 cut(s) 28, 146, 470
Tsp45I GTSAC 2 cut(s) 7, 364
TspDTI ATGAA 3 cut(s) 57, 186, 637
TspMI CCCGGG 1 cut(s) 442
TspRI CASTG 2 cut(s) 148, 480
XapI RAATTY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmaI CCCGGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.