Indole-3-acetic acid-amido synthetase GH3.17-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28130 |
| fragaria_vesca | FvH4_4g22430 |
| malus_domestica | MD13G1132300.v1.1 MD16G1142800.v1.1 |
| prunus_persica | Prupe.1G213200_v2.0.a1 Prupe.1G213200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0428671 |
| rosa_laevigata | RLG00000007136 |
| rosa_multiflora | Rmu_sc0004421.1_g000008 |
| rosa_roxburghii | Rroxscaffold_5G00370340 |
| rosa_rugosa | Rorug04G0227000 |
| rosa_samantha | Rh4AG284400 Rh4BG290300 |
| rosa_wichuraiana | Rw4G024700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 552, 1095, 1590 |
| AciI | CCGC | 2 cut(s) | 621, 957 |
| AclI | AACGTT | 1 cut(s) | 1329 |
| AclWI | GGATC | 6 cut(s) | 63, 711, 764, 787, 1028, 1702 |
| AcuI | CTGAAG | 2 cut(s) | 363, 1768 |
| AfaI | GTAC | 7 cut(s) | 545, 605, 630, 742, 1247, 1335, 1442 |
| AflIII | ACRYGT | 1 cut(s) | 1458 |
| AgeI | ACCGGT | 1 cut(s) | 737 |
| AgsI | TTSAA | 7 cut(s) | 181, 230, 538, 978, 1412, 1422, 1705 |
| AhlI | ACTAGT | 1 cut(s) | 293 |
| AjiI | CACGTC | 2 cut(s) | 1461, 1508 |
| AjnI | CCWGG | 1 cut(s) | 1471 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 75, 107 |
| Alw21I | GWGCWC | 2 cut(s) | 1488, 1747 |
| Alw26I | GTCTC | 4 cut(s) | 44, 268, 771, 1690 |
| AlwI | GGATC | 6 cut(s) | 63, 711, 764, 787, 1028, 1702 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 35 |
| Ama87I | CYCGRG | 1 cut(s) | 50 |
| AoxI | GGCC | 4 cut(s) | 480, 802, 881, 1625 |
| ApeKI | GCWGC | 1 cut(s) | 1318 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 174, 206 |
| AsiGI | ACCGGT | 1 cut(s) | 737 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1116 |
| AspLEI | GCGC | 3 cut(s) | 725, 845, 1300 |
| AspS9I | GGNCC | 3 cut(s) | 481, 803, 1625 |
| AsuHPI | GGTGA | 4 cut(s) | 89, 211, 916, 1657 |
| AvaI | CYCGRG | 1 cut(s) | 50 |
| AxyI | CCTNAGG | 1 cut(s) | 885 |
| BaeGI | GKGCMC | 1 cut(s) | 1658 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 994, 1027 |
| BanII | GRGCYC | 1 cut(s) | 1747 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1356, 1388 |
| BbsI | GAAGAC | 1 cut(s) | 365 |
| Bbv12I | GWGCWC | 2 cut(s) | 1488, 1747 |
| BbvI | GCAGC | 1 cut(s) | 1330 |
| BccI | CCATC | 5 cut(s) | 236, 284, 401, 916, 1413 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 310, 344 |
| BciT130I | CCWGG | 1 cut(s) | 1473 |
| BcoDI | GTCTC | 4 cut(s) | 44, 268, 771, 1690 |
| BcuI | ACTAGT | 1 cut(s) | 293 |
| BfaI | CTAG | 6 cut(s) | 294, 413, 558, 626, 750, 944 |
| BfmI | CTRYAG | 5 cut(s) | 309, 336, 370, 772, 1591 |
| BfoI | RGCGCY | 1 cut(s) | 1301 |
| BglII | AGATCT | 2 cut(s) | 1171, 1369 |
| BisI | GCNGC | 1 cut(s) | 1319 |
| BlpI | GCTNAGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 1320 |
| Bme1390I | CCNGG | 1 cut(s) | 1473 |
| BmeT110I | CYCGRG | 1 cut(s) | 50 |
| BmgBI | CACGTC | 2 cut(s) | 1461, 1508 |
| BmgT120I | GGNCC | 3 cut(s) | 481, 803, 1625 |
| BmiI | GGNNCC | 1 cut(s) | 1809 |
| BmrFI | CCNGG | 1 cut(s) | 1473 |
| BmsI | GCATC | 4 cut(s) | 318, 1147, 1350, 1589 |
| BpiI | GAAGAC | 1 cut(s) | 365 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1783, 1815 |
| BpmI | CTGGAG | 1 cut(s) | 1758 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 270 |
| BpuEI | CTTGAG | 4 cut(s) | 26, 889, 1148, 1769 |
| BsaAI | YACGTR | 1 cut(s) | 1483 |
| BsaI | GGTCTC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 2 cut(s) | 1471, 1472 |
| BsaWI | WCCGGW | 1 cut(s) | 737 |
| Bse118I | RCCGGY | 1 cut(s) | 737 |
| Bse1I | ACTGG | 1 cut(s) | 919 |
| Bse21I | CCTNAGG | 1 cut(s) | 885 |
| Bse3DI | GCAATG | 1 cut(s) | 1522 |
| BseBI | CCWGG | 1 cut(s) | 1473 |
| BseDI | CCNNGG | 2 cut(s) | 1471, 1472 |
| BseGI | GGATG | 4 cut(s) | 412, 435, 767, 1414 |
| BseMI | GCAATG | 1 cut(s) | 1522 |
| BseMII | CTCAG | 3 cut(s) | 284, 987, 1554 |
| BseNI | ACTGG | 1 cut(s) | 919 |
| BseRI | GAGGAG | 3 cut(s) | 278, 886, 1755 |
| BseSI | GKGCMC | 1 cut(s) | 1658 |
| BseXI | GCAGC | 1 cut(s) | 1330 |
| BsgI | GTGCAG | 1 cut(s) | 1337 |
| BshFI | GGCC | 4 cut(s) | 482, 804, 883, 1627 |
| BshTI | ACCGGT | 1 cut(s) | 737 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1488, 1747 |
| BsiHKCI | CYCGRG | 1 cut(s) | 50 |
| BsiSI | CCGG | 1 cut(s) | 738 |
| BslFI | GGGAC | 3 cut(s) | 176, 316, 1625 |
| BsmAI | GTCTC | 4 cut(s) | 44, 268, 771, 1690 |
| BsmBI | CGTCTC | 1 cut(s) | 268 |
| BsmFI | GGGAC | 3 cut(s) | 176, 316, 1625 |
| BsnI | GGCC | 4 cut(s) | 482, 804, 883, 1627 |
| Bso31I | GGTCTC | 1 cut(s) | 44 |
| BsoBI | CYCGRG | 1 cut(s) | 50 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1488, 1658, 1747 |
| Bsp1407I | TGTACA | 1 cut(s) | 1245 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 270 |
| BspACI | CCGC | 2 cut(s) | 621, 957 |
| BspANI | GGCC | 4 cut(s) | 482, 804, 883, 1627 |
| BspCNI | CTCAG | 3 cut(s) | 283, 988, 1555 |
| BspHI | TCATGA | 1 cut(s) | 390 |
| BspLI | GGNNCC | 1 cut(s) | 1809 |
| BspMAI | CTGCAG | 2 cut(s) | 313, 776 |
| BspPI | GGATC | 6 cut(s) | 63, 711, 764, 787, 1028, 1702 |
| BspQI | GCTCTTC | 1 cut(s) | 1493 |
| BspTNI | GGTCTC | 1 cut(s) | 44 |
| BsrDI | GCAATG | 1 cut(s) | 1522 |
| BsrFI | RCCGGY | 1 cut(s) | 737 |
| BsrGI | TGTACA | 1 cut(s) | 1245 |
| BsrI | ACTGG | 1 cut(s) | 919 |
| BssAI | RCCGGY | 1 cut(s) | 737 |
| BssECI | CCNNGG | 2 cut(s) | 1471, 1472 |
| Bst2UI | CCWGG | 1 cut(s) | 1473 |
| Bst4CI | ACNGT | 3 cut(s) | 608, 745, 969 |
| Bst6I | CTCTTC | 2 cut(s) | 1107, 1493 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1483 |
| BstAUI | TGTACA | 1 cut(s) | 1245 |
| BstBAI | YACGTR | 1 cut(s) | 1483 |
| BstC8I | GCNNGC | 2 cut(s) | 377, 593 |
| BstDEI | CTNAG | 7 cut(s) | 270, 647, 885, 996, 1337, 1563, 1827 |
| BstF5I | GGATG | 4 cut(s) | 412, 435, 767, 1414 |
| BstH2I | RGCGCY | 1 cut(s) | 1301 |
| BstHHI | GCGC | 3 cut(s) | 725, 845, 1300 |
| BstMAI | GTCTC | 4 cut(s) | 44, 268, 771, 1690 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 597, 665, 1483 |
| BstNI | CCWGG | 1 cut(s) | 1473 |
| BstNSI | RCATGY | 2 cut(s) | 379, 604 |
| BstSCI | CCNGG | 1 cut(s) | 1471 |
| BstSFI | CTRYAG | 5 cut(s) | 309, 336, 370, 772, 1591 |
| BstSLI | GKGCMC | 1 cut(s) | 1658 |
| BstV1I | GCAGC | 1 cut(s) | 1330 |
| BstV2I | GAAGAC | 1 cut(s) | 365 |
| BstX2I | RGATCY | 3 cut(s) | 55, 1171, 1369 |
| BstYI | RGATCY | 3 cut(s) | 55, 1171, 1369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 885 |
| BsuRI | GGCC | 4 cut(s) | 482, 804, 883, 1627 |
| BtrI | CACGTC | 2 cut(s) | 1461, 1508 |
| BtsCI | GGATG | 4 cut(s) | 412, 435, 767, 1414 |
| BtsI | GCAGTG | 1 cut(s) | 1389 |
| BtsIMutI | CAGTG | 3 cut(s) | 759, 1347, 1389 |
| Cac8I | GCNNGC | 2 cut(s) | 377, 593 |
| CaiI | CAGNNNCTG | 1 cut(s) | 35 |
| CciI | TCATGA | 1 cut(s) | 390 |
| CfoI | GCGC | 3 cut(s) | 725, 845, 1300 |
| Cfr10I | RCCGGY | 1 cut(s) | 737 |
| Cfr13I | GGNCC | 3 cut(s) | 481, 803, 1625 |
| Csp6I | GTAC | 7 cut(s) | 544, 604, 629, 741, 1246, 1334, 1441 |
| CspAI | ACCGGT | 1 cut(s) | 737 |
| CviAII | CATG | 5 cut(s) | 376, 391, 601, 641, 1069 |
| CviQI | GTAC | 7 cut(s) | 544, 604, 629, 741, 1246, 1334, 1441 |
| DdeI | CTNAG | 7 cut(s) | 270, 647, 885, 996, 1337, 1563, 1827 |
| Eam1104I | CTCTTC | 2 cut(s) | 1107, 1493 |
| EarI | CTCTTC | 2 cut(s) | 1107, 1493 |
| Ecl136II | GAGCTC | 1 cut(s) | 1745 |
| Eco24I | GRGCYC | 1 cut(s) | 1747 |
| Eco31I | GGTCTC | 1 cut(s) | 44 |
| Eco32I | GATATC | 1 cut(s) | 259 |
| Eco53kI | GAGCTC | 1 cut(s) | 1745 |
| Eco57I | CTGAAG | 2 cut(s) | 363, 1768 |
| Eco81I | CCTNAGG | 1 cut(s) | 885 |
| Eco88I | CYCGRG | 1 cut(s) | 50 |
| EcoICRI | GAGCTC | 1 cut(s) | 1745 |
| EcoRII | CCWGG | 1 cut(s) | 1471 |
| EcoRV | GATATC | 1 cut(s) | 259 |
| EcoT38I | GRGCYC | 1 cut(s) | 1747 |
| Esp3I | CGTCTC | 1 cut(s) | 268 |
| FaeI | CATG | 5 cut(s) | 379, 394, 604, 644, 1072 |
| FaqI | GGGAC | 3 cut(s) | 176, 316, 1625 |
| FatI | CATG | 5 cut(s) | 375, 390, 600, 640, 1068 |
| FblI | GTMKAC | 3 cut(s) | 552, 1095, 1590 |
| Fnu4HI | GCNGC | 1 cut(s) | 1319 |
| FokI | GGATG | 4 cut(s) | 419, 442, 754, 1401 |
| FriOI | GRGCYC | 1 cut(s) | 1747 |
| Fsp4HI | GCNGC | 1 cut(s) | 1319 |
| FspBI | CTAG | 6 cut(s) | 294, 413, 558, 626, 750, 944 |
| GlaI | GCGC | 3 cut(s) | 724, 844, 1299 |
| GluI | GCNGC | 1 cut(s) | 1319 |
| GsuI | CTGGAG | 1 cut(s) | 1758 |
| HaeII | RGCGCY | 1 cut(s) | 1301 |
| HaeIII | GGCC | 4 cut(s) | 482, 804, 883, 1627 |
| HapII | CCGG | 1 cut(s) | 738 |
| HhaI | GCGC | 3 cut(s) | 725, 845, 1300 |
| Hin1II | CATG | 5 cut(s) | 379, 394, 604, 644, 1072 |
| Hin6I | GCGC | 3 cut(s) | 723, 843, 1298 |
| HinP1I | GCGC | 3 cut(s) | 723, 843, 1298 |
| HincII | GTYRAC | 2 cut(s) | 515, 1096 |
| HindII | GTYRAC | 2 cut(s) | 515, 1096 |
| HindIII | AAGCTT | 3 cut(s) | 44, 175, 1529 |
| HpaII | CCGG | 1 cut(s) | 738 |
| HphI | GGTGA | 4 cut(s) | 89, 211, 916, 1657 |
| Hpy166II | GTNNAC | 6 cut(s) | 515, 553, 965, 1096, 1443, 1591 |
| Hpy188I | TCNGA | 8 cut(s) | 60, 137, 256, 524, 656, 939, 997, 1564 |
| Hpy8I | GTNNAC | 6 cut(s) | 515, 553, 965, 1096, 1443, 1591 |
| Hpy99I | CGWCG | 3 cut(s) | 215, 1097, 1100 |
| HpyAV | CCTTC | 3 cut(s) | 342, 854, 1428 |
| HpyCH4III | ACNGT | 3 cut(s) | 608, 745, 969 |
| HpyCH4IV | ACGT | 8 cut(s) | 213, 549, 1329, 1460, 1482, 1507, 1587, 1658 |
| HpyCH4V | TGCA | 6 cut(s) | 71, 311, 774, 1127, 1318, 1602 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 597, 665, 1483 |
| HpyF3I | CTNAG | 7 cut(s) | 270, 647, 885, 996, 1337, 1563, 1827 |
| HpySE526I | ACGT | 8 cut(s) | 213, 549, 1329, 1460, 1482, 1507, 1587, 1658 |
| Hsp92II | CATG | 5 cut(s) | 379, 394, 604, 644, 1072 |
| HspAI | GCGC | 3 cut(s) | 723, 843, 1298 |
| LguI | GCTCTTC | 1 cut(s) | 1493 |
| LmnI | GCTCC | 3 cut(s) | 656, 1495, 1742 |
| Lsp1109I | GCAGC | 1 cut(s) | 1330 |
| LweI | GCATC | 4 cut(s) | 318, 1147, 1350, 1589 |
| MaeI | CTAG | 6 cut(s) | 294, 413, 558, 626, 750, 944 |
| MaeII | ACGT | 8 cut(s) | 213, 549, 1329, 1460, 1482, 1507, 1587, 1658 |
| MaeIII | GTNAC | 7 cut(s) | 11, 745, 910, 1001, 1276, 1384, 1508 |
| MflI | RGATCY | 3 cut(s) | 55, 1171, 1369 |
| MhlI | GDGCHC | 3 cut(s) | 1488, 1658, 1747 |
| MluCI | AATT | 5 cut(s) | 202, 347, 815, 828, 1304 |
| MlyI | GAGTC | 5 cut(s) | 457, 660, 758, 773, 1711 |
| MmeI | TCCRAC | 4 cut(s) | 106, 634, 962, 1161 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1116 |
| MseI | TTAA | 5 cut(s) | 798, 1020, 1191, 1670, 1731 |
| MslI | CAYNNNNRTG | 2 cut(s) | 380, 1515 |
| MspA1I | CMGCKG | 1 cut(s) | 341 |
| MspI | CCGG | 1 cut(s) | 738 |
| MspR9I | CCNGG | 1 cut(s) | 1473 |
| MvaI | CCWGG | 1 cut(s) | 1473 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 597, 665, 1483 |
| NlaIII | CATG | 5 cut(s) | 379, 394, 604, 644, 1072 |
| NlaIV | GGNNCC | 1 cut(s) | 1809 |
| NmuCI | GTSAC | 5 cut(s) | 745, 910, 1276, 1384, 1508 |
| NspI | RCATGY | 2 cut(s) | 379, 604 |
| PaeI | GCATGC | 1 cut(s) | 379 |
| PaeR7I | CTCGAG | 1 cut(s) | 50 |
| PagI | TCATGA | 1 cut(s) | 390 |
| PasI | CCCWGGG | 1 cut(s) | 1472 |
| PciSI | GCTCTTC | 1 cut(s) | 1493 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 156, 788, 1664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1116 |
| PflFI | GACNNNGTC | 2 cut(s) | 466, 782 |
| PinAI | ACCGGT | 1 cut(s) | 737 |
| PkrI | GCNGC | 1 cut(s) | 1320 |
| PleI | GAGTC | 5 cut(s) | 457, 659, 758, 773, 1711 |
| PpsI | GAGTC | 5 cut(s) | 457, 659, 758, 773, 1711 |
| Ppu21I | YACGTR | 1 cut(s) | 1483 |
| Psp124BI | GAGCTC | 1 cut(s) | 1747 |
| Psp1406I | AACGTT | 1 cut(s) | 1329 |
| Psp6I | CCWGG | 1 cut(s) | 1471 |
| PspGI | CCWGG | 1 cut(s) | 1471 |
| PspN4I | GGNNCC | 1 cut(s) | 1809 |
| PspPI | GGNCC | 3 cut(s) | 481, 803, 1625 |
| PstI | CTGCAG | 2 cut(s) | 313, 776 |
| PstNI | CAGNNNCTG | 1 cut(s) | 35 |
| PsuI | RGATCY | 3 cut(s) | 55, 1171, 1369 |
| PsyI | GACNNNGTC | 2 cut(s) | 466, 782 |
| PvuII | CAGCTG | 1 cut(s) | 341 |
| RsaI | GTAC | 7 cut(s) | 545, 605, 630, 742, 1247, 1335, 1442 |
| RsaNI | GTAC | 7 cut(s) | 544, 604, 629, 741, 1246, 1334, 1441 |
| RseI | CAYNNNNRTG | 2 cut(s) | 380, 1515 |
| SacI | GAGCTC | 1 cut(s) | 1747 |
| SalI | GTCGAC | 1 cut(s) | 1094 |
| SapI | GCTCTTC | 1 cut(s) | 1493 |
| SaqAI | TTAA | 5 cut(s) | 798, 1020, 1191, 1670, 1731 |
| SatI | GCNGC | 1 cut(s) | 1319 |
| Sau96I | GGNCC | 3 cut(s) | 481, 803, 1625 |
| SchI | GAGTC | 5 cut(s) | 457, 660, 758, 773, 1711 |
| ScrFI | CCNGG | 1 cut(s) | 1473 |
| SduI | GDGCHC | 3 cut(s) | 1488, 1658, 1747 |
| SfaNI | GCATC | 4 cut(s) | 318, 1147, 1350, 1589 |
| SfcI | CTRYAG | 5 cut(s) | 309, 336, 370, 772, 1591 |
| Sfr274I | CTCGAG | 1 cut(s) | 50 |
| SgrDI | CGTCGACG | 1 cut(s) | 1094 |
| SlaI | CTCGAG | 1 cut(s) | 50 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 380, 1515 |
| SmlI | CTYRAG | 5 cut(s) | 41, 50, 868, 1163, 1748 |
| SmoI | CTYRAG | 5 cut(s) | 41, 50, 868, 1163, 1748 |
| SpeI | ACTAGT | 1 cut(s) | 293 |
| SphI | GCATGC | 1 cut(s) | 379 |
| Sse9I | AATT | 5 cut(s) | 202, 347, 815, 828, 1304 |
| SsiI | CCGC | 2 cut(s) | 621, 957 |
| SspMI | CTAG | 6 cut(s) | 294, 413, 558, 626, 750, 944 |
| SstI | GAGCTC | 1 cut(s) | 1747 |
| StyD4I | CCNGG | 1 cut(s) | 1471 |
| TaaI | ACNGT | 3 cut(s) | 608, 745, 969 |
| TaiI | ACGT | 8 cut(s) | 216, 552, 1332, 1463, 1485, 1510, 1590, 1661 |
| TaqI | TCGA | 9 cut(s) | 51, 682, 791, 920, 1080, 1095, 1197, 1344, 1619 |
| TaqII | GACCGA | 2 cut(s) | 772, 1193 |
| TasI | AATT | 5 cut(s) | 202, 347, 815, 828, 1304 |
| TatI | WGTACW | 6 cut(s) | 543, 603, 628, 1245, 1333, 1440 |
| Tru1I | TTAA | 5 cut(s) | 798, 1020, 1191, 1670, 1731 |
| Tru9I | TTAA | 5 cut(s) | 798, 1020, 1191, 1670, 1731 |
| TscAI | CASTG | 3 cut(s) | 766, 1354, 1389 |
| TseFI | GTSAC | 5 cut(s) | 745, 910, 1276, 1384, 1508 |
| TseI | GCWGC | 1 cut(s) | 1318 |
| Tsp45I | GTSAC | 5 cut(s) | 745, 910, 1276, 1384, 1508 |
| TspDTI | ATGAA | 4 cut(s) | 214, 407, 433, 840 |
| TspGWI | ACGGA | 5 cut(s) | 165, 456, 1014, 1298, 1451 |
| TspRI | CASTG | 3 cut(s) | 766, 1354, 1389 |
| Tth111I | GACNNNGTC | 2 cut(s) | 466, 782 |
| XceI | RCATGY | 2 cut(s) | 379, 604 |
| XhoI | CTCGAG | 1 cut(s) | 50 |
| XmiI | GTMKAC | 3 cut(s) | 552, 1095, 1590 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1116 |
| XspI | CTAG | 6 cut(s) | 294, 413, 558, 626, 750, 944 |