Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011922

Physical Location & Seq

Genomic Coordinates Forward (+)

11084666 .. 11088589

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGATAGAACCGTCGATGGAGAGAGAGAATGGTGCTTTAACGGCGGCGACAACAACGACGACGGCGGTGACTTCTCCTCCTCCGATGGCTTCTTCACCGCGTCAAGCTTTAGTTGAGAGATTGAAAGATTATGGACAAGAAGATATTTTCTCTCTTTGGGATGAACTTTCACCAGACGAGAAAGATTTTCTCGTTAGAGATATTGAGAATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAGGTTTACCGGTTGCGGCGATTGAACCGGTACCGGAGAATTGGGTTTCGACAGTAGATGGTAGAACAATGGAAGATAGAGAGAAATGGTGGAAAATGGGATTAAAAACTATCTATGAAGGCAAATTAGGTGTTGTGCTTTTATCTGGTGGACAGGGAACAAGGCTTGGAAGCTCAGATCCAAAAGGATGTTTCAATATCGGATTACCATCAGGGAAATCGCTCTTTCAGATTCAGGCAGAGAGAATCTTGTGTGTTCAAAGACTTGCTGCTCAAGTAGTGAGTGAAGGTCCAATTCGTCCAGTTACAATACATTGGTATATTATGACTAGTCCATTTACTGATGAAGCGACACGAAAATATTTCTCGAGTCACAAGTACTTTGGTCTTGAACCAGATCAAATCAGTTTTTTCCAACAAGGTACTTTGCCCTGCGTTACAAAGGATGGAAAGTTTATTATGGAGACACCTTTCAGTCTAGCTAAAGCTCCAGATGGTAACGGCGGAGTCTATGCAGCGCTAAAGTGTTCAAGGCTATTAGAGGATATGGCTTCTAGGGGGATTAAATACGTCGATTGCTATGGCGTTGACAATGTCCTGGTTCGAGTAGCTGATCCTACTTTTCTTGGATACTTCATCGATAAAGGGGCTGCTTCGGCTGCAAAAGTTGTGCGGAAGGCATATCCTCAAGAACAGGTAGGAGTGTTTGTTAGAAGAGGTAAAGGAGGACCGTTGACAGTAGTTGAGTATAGTGAGCTTGATCAGTCTATGGCTTCTGCTATTAATCAACGAACAGGACGTCTTCAATATTGCTGGAGTAACGTGTGCTTACACATGTTTACTTTAGATTTCCTTAATCAAGTAGCGACCGGCCTAGAAAAAGATAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003977 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006011 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009553 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019276 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051748 GO:0052630 GO:0055086 GO:0061458 GO:0070569 GO:0071704 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

UDPGP

Protein Analysis

383

Amino Acids

42.44

Weight (kDa)

5.75

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	81 - 351	7.8e-35	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31070 AT2G35020
fragaria_vesca	FvH4_3g12660 FvH4_3g12660
malus_domestica	MD05G1248900.v1.1 MD10G1229400.v1.1
prunus_persica	Prupe.4G115400_v2.0.a1
pyrus_communis	pycom05g22580 pycom10g19290
rosa_chinensis	RchiOBHm_Chr5g0020631
rosa_laevigata	RLG00000032545
rosa_multiflora	Rmu_sc0005607.1_g000015
rosa_roxburghii	Rroxscaffold_1G00057660
rosa_rugosa	Rorug05G0062100
rosa_samantha	Rh5AG151800 Rh5BG151400 Rh5CG162800 Rh5DG150700
rosa_wichuraiana	Rw5G013450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1060
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccII	CGCG	1 cut(s)	100
AciI	CCGC	6 cut(s)	44, 65, 98, 275, 762, 931
AclWI	GGATC	4 cut(s)	222, 242, 431, 866
AcsI	RAATTY	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	1057
AfaI	GTAC	3 cut(s)	291, 638, 682
AfeI	AGCGCT	1 cut(s)	777
AflIII	ACRYGT	2 cut(s)	1080, 1092
AgeI	ACCGGT	2 cut(s)	268, 286
AgsI	TTSAA	7 cut(s)	124, 284, 454, 518, 650, 789, 1064
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	855
AluBI	AGCT	6 cut(s)	107, 432, 740, 746, 869, 1015
AluI	AGCT	6 cut(s)	107, 432, 740, 746, 869, 1015
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	4 cut(s)	222, 242, 431, 866
Ama87I	CYCGRG	1 cut(s)	625
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	1 cut(s)	1129
ApeKI	GCWGC	4 cut(s)	527, 773, 908, 917
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	1042, 1074
AseI	ATTAAT	1 cut(s)	1041
AsiGI	ACCGGT	2 cut(s)	268, 286
Asp718I	GGTACC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	2 cut(s)	548, 986
AsuHPI	GGTGA	3 cut(s)	79, 87, 162
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	2 cut(s)	548, 986
BanI	GGYRCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	1052
BbvI	GCAGC	4 cut(s)	514, 785, 895, 904
BccI	CCATC	6 cut(s)	10, 79, 311, 475, 698, 746
BceAI	ACGGC	3 cut(s)	57, 78, 775
BciT130I	CCWGG	1 cut(s)	857
BciVI	GTATCC	1 cut(s)	881
BclI	TGATCA	1 cut(s)	1018
BcoDI	GTCTC	1 cut(s)	716
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	4 cut(s)	588, 737, 813, 1133
BfoI	RGCGCY	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	6 cut(s)	45, 276, 528, 774, 909, 918
BlsI	GCNGC	6 cut(s)	46, 277, 529, 775, 910, 919
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	2 cut(s)	548, 986
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	548, 986
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	1052
BpmI	CTGGAG	2 cut(s)	732, 1093
BpuEI	CTTGAG	3 cut(s)	243, 516, 930
Bsa29I	ATCGAT	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	1057
BsaWI	WCCGGW	3 cut(s)	268, 286, 292
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 951, 981
Bse118I	RCCGGY	3 cut(s)	268, 286, 1127
Bse1I	ACTGG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	857
BseCI	ATCGAT	1 cut(s)	897
BseGI	GGATG	3 cut(s)	166, 452, 709
BseJI	GATNNNNATC	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	66, 69
BseXI	GCAGC	4 cut(s)	514, 785, 895, 904
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	1128
BshFI	GGCC	1 cut(s)	1131
BshNI	GGYRCC	1 cut(s)	289
BshTI	ACCGGT	2 cut(s)	268, 286
BshVI	ATCGAT	1 cut(s)	897
BsiEI	CGRYCG	1 cut(s)	1128
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	4 cut(s)	269, 287, 293, 1128
BsmAI	GTCTC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	1131
BsoBI	CYCGRG	1 cut(s)	625
Bsp143I	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
BspACI	CCGC	6 cut(s)	44, 65, 98, 275, 762, 931
BspANI	GGCC	1 cut(s)	1131
BspCNI	CTCAG	1 cut(s)	446
BspDI	ATCGAT	1 cut(s)	897
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	4 cut(s)	222, 242, 431, 866
BspT107I	GGYRCC	1 cut(s)	289
BsrFI	RCCGGY	3 cut(s)	268, 286, 1127
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	3 cut(s)	268, 286, 1127
BssMI	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
BssNI	GRCGYC	1 cut(s)	1057
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	4 cut(s)	12, 313, 990, 997
Bst6I	CTCTTC	1 cut(s)	967
BstACI	GRCGYC	1 cut(s)	1057
BstDEI	CTNAG	1 cut(s)	433
BstF5I	GGATG	3 cut(s)	166, 452, 709
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	7 cut(s)	217, 232, 237, 439, 658, 874, 1021
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
BstMCI	CGRYCG	1 cut(s)	1128
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 914, 917
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	514, 785, 895, 904
BstV2I	GAAGAC	1 cut(s)	1052
BstX2I	RGATCY	2 cut(s)	214, 436
BstYI	RGATCY	2 cut(s)	214, 436
Bsu15I	ATCGAT	1 cut(s)	897
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	1 cut(s)	1131
BsuTUI	ATCGAT	1 cut(s)	897
BtsCI	GGATG	3 cut(s)	166, 452, 709
CfoI	GCGC	1 cut(s)	778
Cfr10I	RCCGGY	3 cut(s)	268, 286, 1127
Cfr13I	GGNCC	2 cut(s)	548, 986
ClaI	ATCGAT	1 cut(s)	897
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	290, 637, 681
CspAI	ACCGGT	2 cut(s)	268, 286
CviAII	CATG	1 cut(s)	1093
CviQI	GTAC	3 cut(s)	290, 637, 681
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	7 cut(s)	216, 231, 236, 438, 657, 873, 1020
DpnII	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
Eam1104I	CTCTTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	967
EciI	GGCGGA	1 cut(s)	777
Eco47I	GGWCC	2 cut(s)	548, 986
Eco47III	AGCGCT	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	855
FaeI	CATG	1 cut(s)	1096
FatI	CATG	1 cut(s)	1092
FbaI	TGATCA	1 cut(s)	1018
Fnu4HI	GCNGC	6 cut(s)	45, 276, 528, 774, 909, 918
FokI	GGATG	3 cut(s)	173, 459, 716
Fsp4HI	GCNGC	6 cut(s)	45, 276, 528, 774, 909, 918
FspBI	CTAG	4 cut(s)	588, 737, 813, 1133
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	6 cut(s)	45, 276, 528, 774, 909, 918
GsuI	CTGGAG	2 cut(s)	732, 1093
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	1131
HapII	CCGG	4 cut(s)	269, 287, 293, 1128
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	778
Hin1I	GRCGYC	1 cut(s)	1057
Hin1II	CATG	1 cut(s)	1096
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	2 cut(s)	847, 993
HindII	GTYRAC	2 cut(s)	847, 993
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	4 cut(s)	490, 504, 628, 765
HpaII	CCGG	4 cut(s)	269, 287, 293, 1128
HphI	GGTGA	3 cut(s)	79, 87, 162
Hpy166II	GTNNAC	6 cut(s)	248, 266, 410, 847, 993, 1098
Hpy188I	TCNGA	5 cut(s)	84, 234, 436, 461, 489
Hpy188III	TCNNGA	4 cut(s)	625, 647, 749, 947
Hpy8I	GTNNAC	6 cut(s)	248, 266, 410, 847, 993, 1098
Hpy99I	CGWCG	4 cut(s)	16, 61, 64, 833
HpyAV	CCTTC	3 cut(s)	371, 539, 928
HpyCH4III	ACNGT	4 cut(s)	12, 313, 990, 997
HpyCH4IV	ACGT	3 cut(s)	828, 1057, 1080
HpyCH4V	TGCA	2 cut(s)	773, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 914, 917
HpyF3I	CTNAG	1 cut(s)	433
HpySE526I	ACGT	3 cut(s)	828, 1057, 1080
Hsp92I	GRCGYC	1 cut(s)	1057
Hsp92II	CATG	1 cut(s)	1096
HspAI	GCGC	1 cut(s)	776
KpnI	GGTACC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	4 cut(s)	514, 785, 895, 904
MaeI	CTAG	4 cut(s)	588, 737, 813, 1133
MaeII	ACGT	3 cut(s)	828, 1057, 1080
MaeIII	GTNAC	6 cut(s)	67, 562, 629, 694, 755, 1076
MalI	GATC	7 cut(s)	216, 231, 236, 438, 657, 873, 1020
MboI	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
MboII	GAAGA	6 cut(s)	84, 152, 209, 344, 984, 1052
MflI	RGATCY	2 cut(s)	214, 436
MluCI	AATT	4 cut(s)	208, 298, 383, 552
MlyI	GAGTC	2 cut(s)	637, 774
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	6 cut(s)	87, 90, 793, 954, 968, 977
MseI	TTAA	5 cut(s)	38, 362, 822, 1041, 1113
MspI	CCGG	4 cut(s)	269, 287, 293, 1128
MspR9I	CCNGG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	857
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	41, 914, 917
NdeII	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
NlaIII	CATG	1 cut(s)	1096
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	67, 629
NspI	RCATGY	1 cut(s)	1096
PaeR7I	CTCGAG	1 cut(s)	625
PciI	ACATGT	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	1054
PfeI	GAWTC	2 cut(s)	490, 504
PflFI	GACNNNGTC	1 cut(s)	851
PinAI	ACCGGT	2 cut(s)	268, 286
PkrI	GCNGC	6 cut(s)	46, 277, 529, 775, 910, 919
PleI	GAGTC	2 cut(s)	636, 773
PpsI	GAGTC	2 cut(s)	636, 773
PscI	ACATGT	1 cut(s)	1092
PshBI	ATTAAT	1 cut(s)	1041
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	548, 986
PsuI	RGATCY	2 cut(s)	214, 436
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	3 cut(s)	291, 638, 682
RsaNI	GTAC	3 cut(s)	290, 637, 681
SaqAI	TTAA	5 cut(s)	38, 362, 822, 1041, 1113
SatI	GCNGC	6 cut(s)	45, 276, 528, 774, 909, 918
Sau3AI	GATC	7 cut(s)	214, 229, 234, 436, 655, 871, 1018
Sau96I	GGNCC	2 cut(s)	548, 986
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	2 cut(s)	637, 774
ScrFI	CCNGG	1 cut(s)	857
Sfr274I	CTCGAG	1 cut(s)	625
SinI	GGWCC	2 cut(s)	548, 986
SlaI	CTCGAG	1 cut(s)	625
SmlI	CTYRAG	4 cut(s)	258, 531, 625, 945
SmoI	CTYRAG	4 cut(s)	258, 531, 625, 945
SpeI	ACTAGT	1 cut(s)	587
Sse9I	AATT	4 cut(s)	208, 298, 383, 552
SsiI	CCGC	6 cut(s)	44, 65, 98, 275, 762, 931
SspI	AATATT	2 cut(s)	620, 1067
SspMI	CTAG	4 cut(s)	588, 737, 813, 1133
StyD4I	CCNGG	1 cut(s)	855
TaaI	ACNGT	4 cut(s)	12, 313, 990, 997
TaiI	ACGT	3 cut(s)	831, 1060, 1083
TaqI	TCGA	6 cut(s)	14, 308, 626, 831, 862, 897
TasI	AATT	4 cut(s)	208, 298, 383, 552
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	47, 278
TfiI	GAWTC	2 cut(s)	490, 504
Tru1I	TTAA	5 cut(s)	38, 362, 822, 1041, 1113
Tru9I	TTAA	5 cut(s)	38, 362, 822, 1041, 1113
TseFI	GTSAC	2 cut(s)	67, 629
TseI	GCWGC	4 cut(s)	527, 773, 908, 917
Tsp45I	GTSAC	2 cut(s)	67, 629
TspDTI	ATGAA	4 cut(s)	177, 390, 618, 883
Tth111I	GACNNNGTC	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	548, 986
VspI	ATTAAT	1 cut(s)	1041
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	1096
XhoI	CTCGAG	1 cut(s)	625
XspI	CTAG	4 cut(s)	588, 737, 813, 1133
ZraI	GACGTC	1 cut(s)	1058
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.