Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026663

Physical Location & Seq

Genomic Coordinates Forward (+)

13077890 .. 13080265

Gene Structure 2376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35515.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAAAGAAGAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTTCCTAAATCCGTTGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGATTAATTACCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGAGCAAATCATTGTCAAACTTCATAGTTTATTTGGCAACAAATGGTCTTTGATTGCTGGGAAATTACCGGGAAGAACCGATAATGAGATTAAAAATTATTGGAACACTCATATAAAAAGGAAGCTTCTTAACCGTGGTATTGACCCAAAAACTCACGGTTCGATCATCGAGCCTAAAACGACATCGTTTCATCCCCGAAATGAAGATTTGAAGTCCACGTTTCCCGGTTCTGTTAAACTAAAGATGGAGACTTCTTGTGAAAACTGTGCTTCTACGAGCGGTACGACTACGGACGAGGATTTACGGTTAAGTGTTGATTGTGATTACAGATATGATCATCTGGACAAGGAGCTAAACTTGGACCTAACACTCGGGTACAGTCCGACTCGATTTGTCGGGGTCGGATCTTGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

212

Amino Acids

24.24

Weight (kDa)

8.97

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	5.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	9.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35515 AT4G09460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	501
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	505, 599
AgsI	TTSAA	1 cut(s)	433
AluBI	AGCT	2 cut(s)	346, 574
AluI	AGCT	2 cut(s)	346, 574
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	634
Ama87I	CYCGRG	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	205
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	2 cut(s)	291, 447
AsuHPI	GGTGA	3 cut(s)	3, 110, 230
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	583
BccI	CCATC	3 cut(s)	162, 209, 460
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	2 cut(s)	291, 447
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	637
Bme1390I	CCNGG	2 cut(s)	291, 447
Bme18I	GGWCC	1 cut(s)	583
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	583
BmrFI	CCNGG	2 cut(s)	291, 447
BpuMI	CCSGG	2 cut(s)	291, 447
BsaAI	YACGTR	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	412
BseYI	CCCAGC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	290, 447
BsmAI	GTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	593
Bsp143I	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
BspACI	CCGC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	634
BspQI	GCTCTTC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
Bst4CI	ACNGT	5 cut(s)	356, 380, 488, 528, 602
Bst6I	CTCTTC	2 cut(s)	123, 216
BstBAI	YACGTR	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	6 cut(s)	11, 67, 193, 387, 559, 629
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
BstSCI	CCNGG	2 cut(s)	289, 445
BstSNI	TACGTA	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	504, 598
CviAII	CATG	4 cut(s)	15, 34, 48, 95
CviJI	RGCY	5 cut(s)	29, 105, 346, 394, 574
CviKI_1	RGCY	5 cut(s)	29, 105, 346, 394, 574
CviQI	GTAC	2 cut(s)	504, 598
DpnI	GATC	6 cut(s)	10, 66, 192, 386, 558, 628
DpnII	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
Eam1104I	CTCTTC	2 cut(s)	123, 216
EarI	CTCTTC	2 cut(s)	123, 216
Eco105I	TACGTA	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	593
FaeI	CATG	4 cut(s)	18, 37, 51, 98
FatI	CATG	4 cut(s)	14, 33, 47, 94
FbaI	TGATCA	1 cut(s)	556
FokI	GGATG	1 cut(s)	399
FspBI	CTAG	1 cut(s)	637
GsaI	CCCAGC	1 cut(s)	282
HapII	CCGG	2 cut(s)	290, 447
Hin1II	CATG	4 cut(s)	18, 37, 51, 98
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	290, 447
HphI	GGTGA	3 cut(s)	3, 110, 230
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	2 cut(s)	606, 626
Hpy188III	TCNNGA	2 cut(s)	188, 563
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	2 cut(s)	95, 191
HpyCH4III	ACNGT	5 cut(s)	356, 380, 488, 528, 602
HpyCH4IV	ACGT	4 cut(s)	70, 88, 199, 440
HpySE526I	ACGT	4 cut(s)	70, 88, 199, 440
Hsp92II	CATG	4 cut(s)	18, 37, 51, 98
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	44, 571
LpnPI	CCDG	5 cut(s)	201, 264, 303, 460, 548
MaeI	CTAG	1 cut(s)	637
MaeII	ACGT	4 cut(s)	70, 88, 199, 440
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	6 cut(s)	10, 66, 192, 386, 558, 628
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
MboII	GAAGA	7 cut(s)	18, 71, 74, 110, 233, 306, 437
MflI	RGATCY	1 cut(s)	626
MluCI	AATT	4 cut(s)	175, 205, 284, 316
MlyI	GAGTC	1 cut(s)	601
MmeI	TCCRAC	2 cut(s)	604, 629
MnlI	CCTC	1 cut(s)	511
MseI	TTAA	7 cut(s)	164, 174, 195, 312, 351, 456, 530
MspI	CCGG	2 cut(s)	290, 447
MspR9I	CCNGG	2 cut(s)	291, 447
NciI	CCSGG	2 cut(s)	291, 447
NdeII	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
NlaIII	CATG	4 cut(s)	18, 37, 51, 98
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Ppu21I	YACGTR	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	626
RsaI	GTAC	2 cut(s)	505, 599
RsaNI	GTAC	2 cut(s)	504, 598
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	7 cut(s)	164, 174, 195, 312, 351, 456, 530
Sau3AI	GATC	6 cut(s)	8, 64, 190, 384, 556, 626
Sau96I	GGNCC	1 cut(s)	583
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	2 cut(s)	291, 447
SetI	ASST	8 cut(s)	73, 91, 183, 202, 348, 443, 576, 588
SinI	GGWCC	1 cut(s)	583
SnaBI	TACGTA	1 cut(s)	89
Sse9I	AATT	4 cut(s)	175, 205, 284, 316
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	289, 445
TaaI	ACNGT	5 cut(s)	356, 380, 488, 528, 602
TaiI	ACGT	4 cut(s)	73, 91, 202, 443
TaqI	TCGA	3 cut(s)	383, 390, 610
TasI	AATT	4 cut(s)	175, 205, 284, 316
Tru1I	TTAA	7 cut(s)	164, 174, 195, 312, 351, 456, 530
Tru9I	TTAA	7 cut(s)	164, 174, 195, 312, 351, 456, 530
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	50, 233, 401, 438
TspGWI	ACGGA	2 cut(s)	118, 527
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	583
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	205
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.