Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026663

Physical Location & Seq

Genomic Coordinates Forward (+)

5992908 .. 5994258

Gene Structure 1351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAAGAAGATCAACGTCTCGTAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCTTCCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTACCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAAACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACAGATAACGAAATAAAGAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCACGGTATTGATCCACAAACTCATCGTCAGATTAACGAATCCAAAACGGTGTCGTCTCAAGTTGTTGTTCCTATTCAAAACGATGCCGTTGAGTATTCTTTTTCCAATTTAGCCGTTAAACCGAAGACGGAAAATTCCTCCGATAACGGAGCTTCGACTAGCGGCACGACGACGGACGAGGATCTCCGGCAGAATGGGGAGTGTTATTATAGTGATAATTCAGGACATATAAAGCTGAATTTGGATTTAACTCTTGGGTTTGGATCCTGGTCGGGTCGGATAGTCGGAGTCGGGTCATCGGCTGATTCTAAACCGTGGTGCGACCCGGTGATGGAGGCGCGTTTGTCACTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

236

Amino Acids

26.47

Weight (kDa)

8.64

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	6.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	1.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	1.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0026663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35515 AT4G09460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	694
AciI	CCGC	2 cut(s)	129, 516
AclWI	GGATC	4 cut(s)	359, 543, 612, 625
AcsI	RAATTY	2 cut(s)	487, 592
AfiI	CCNNNNNNNGG	1 cut(s)	685
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	289, 620
AluBI	AGCT	7 cut(s)	29, 47, 249, 278, 346, 506, 589
AluI	AGCT	7 cut(s)	29, 47, 249, 278, 346, 506, 589
Alw26I	GTCTC	2 cut(s)	77, 414
AlwI	GGATC	4 cut(s)	359, 543, 612, 625
ApoI	RAATTY	2 cut(s)	487, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AseI	ATTAAT	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	694
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	110, 694
BamHI	GGATCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	485
BccI	CCATC	2 cut(s)	162, 679
BceAI	ACGGC	2 cut(s)	425, 452
BciT130I	CCWGG	2 cut(s)	291, 622
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	77, 414
BfaI	CTAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	517
BlsI	GCNGC	1 cut(s)	518
Bme1390I	CCNGG	3 cut(s)	291, 622, 680
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	3 cut(s)	291, 622, 680
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	291, 622
BseDI	CCNNGG	1 cut(s)	668
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	685
Bsh1236I	CGCG	1 cut(s)	694
BsiSI	CCGG	2 cut(s)	541, 680
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmAI	GTCTC	2 cut(s)	77, 414
BsmBI	CGTCTC	2 cut(s)	77, 414
Bsp143I	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
BspACI	CCGC	2 cut(s)	129, 516
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	4 cut(s)	359, 543, 612, 625
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
Bst2UI	CCWGG	2 cut(s)	291, 622
Bst4CI	ACNGT	5 cut(s)	98, 359, 403, 669, 705
Bst6I	CTCTTC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	668
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	7 cut(s)	11, 67, 193, 226, 367, 538, 620
BstMAI	GTCTC	2 cut(s)	77, 414
BstMBI	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
BstNI	CCWGG	2 cut(s)	291, 622
BstSCI	CCNGG	3 cut(s)	289, 620, 678
BstUI	CGCG	1 cut(s)	694
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	3 cut(s)	8, 535, 617
BstYI	RGATCY	3 cut(s)	8, 535, 617
BtgI	CCRYGG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	701
CfoI	GCGC	1 cut(s)	694
CviJI	RGCY	9 cut(s)	29, 47, 249, 278, 346, 467, 506, 589, 656
CviKI_1	RGCY	9 cut(s)	29, 47, 249, 278, 346, 467, 506, 589, 656
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	7 cut(s)	10, 66, 192, 225, 366, 537, 619
DpnII	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	289, 620
Esp3I	CGTCTC	2 cut(s)	77, 414
FaiI	YATR	6 cut(s)	84, 246, 333, 564, 582, 584
FalI	AAGNNNNNCTT	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	517
Fsp4HI	GCNGC	1 cut(s)	517
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	1 cut(s)	517
HapII	CCGG	2 cut(s)	541, 680
HhaI	GCGC	1 cut(s)	694
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	3 cut(s)	392, 642, 659
HpaII	CCGG	2 cut(s)	541, 680
HphI	GGTGA	2 cut(s)	110, 694
Hpy188I	TCNGA	4 cut(s)	384, 496, 633, 641
Hpy188III	TCNNGA	2 cut(s)	188, 576
Hpy99I	CGWCG	2 cut(s)	526, 529
HpyAV	CCTTC	2 cut(s)	95, 191
HpyCH4III	ACNGT	5 cut(s)	98, 359, 403, 669, 705
HpyCH4IV	ACGT	2 cut(s)	70, 199
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	2 cut(s)	70, 199
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
LmnI	GCTCC	2 cut(s)	44, 503
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	2 cut(s)	70, 199
MaeIII	GTNAC	3 cut(s)	257, 353, 699
MalI	GATC	7 cut(s)	10, 66, 192, 225, 366, 537, 619
MboI	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
MboII	GAAGA	8 cut(s)	18, 71, 74, 110, 233, 294, 306, 490
MflI	RGATCY	3 cut(s)	8, 535, 617
MluCI	AATT	7 cut(s)	175, 205, 316, 460, 487, 571, 592
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	2 cut(s)	611, 619
MnlI	CCTC	4 cut(s)	333, 502, 526, 682
MseI	TTAA	6 cut(s)	174, 195, 336, 387, 471, 602
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	2 cut(s)	541, 680
MspR9I	CCNGG	3 cut(s)	291, 622, 680
MvaI	CCWGG	2 cut(s)	291, 622
MvnI	CGCG	1 cut(s)	694
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	353, 699
PfeI	GAWTC	2 cut(s)	392, 659
PkrI	GCNGC	1 cut(s)	518
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	289, 620
PspGI	CCWGG	2 cut(s)	289, 620
PspN4I	GGNNCC	1 cut(s)	619
PsuI	RGATCY	3 cut(s)	8, 535, 617
SaqAI	TTAA	6 cut(s)	174, 195, 336, 387, 471, 602
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	7 cut(s)	8, 64, 190, 223, 364, 535, 617
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	3 cut(s)	291, 622, 680
SfaNI	GCATC	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	7 cut(s)	175, 205, 316, 460, 487, 571, 592
SsiI	CCGC	2 cut(s)	129, 516
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	3 cut(s)	289, 620, 678
TaaI	ACNGT	5 cut(s)	98, 359, 403, 669, 705
TaiI	ACGT	2 cut(s)	73, 202
TaqI	TCGA	1 cut(s)	509
TasI	AATT	7 cut(s)	175, 205, 316, 460, 487, 571, 592
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	392, 659
Tru1I	TTAA	6 cut(s)	174, 195, 336, 387, 471, 602
Tru9I	TTAA	6 cut(s)	174, 195, 336, 387, 471, 602
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	2 cut(s)	353, 699
Tsp45I	GTSAC	2 cut(s)	353, 699
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	4 cut(s)	77, 497, 516, 542
TspRI	CASTG	1 cut(s)	708
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	2 cut(s)	487, 592
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.