AT1G54230
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0027179
Physical Location & Seq
Forward (+)
20250518 .. 20252365
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54230.1

Sequence Viewer

Length: 699 bp
ATGGATTCTGCAGATGCGAACGTTACCTTTGAGTACACGTTAAGTTTAGATGATATGGTTTTTGAAGCTTTATCAACAATAGATGATGAACATGATGGAACTGGTCGTGATGTCGATGGGATTTTCAAATTTAACAATGACCGGTACGTGATACCGGATAATTCTAGGGAGCGATTGAGAGGCGAGGTTGAAAAACTAGTTGCTGAAAGAAAAATAGAGAAGGTAGGAAACCGCTACATGATGATGATGCCCCAACGTGTTCCTGCTACTAGAGAAGATTCCACAACGCCACAACGTGATCCTCAGGCAGAAGCAGTAGCAAAACTAGTCGCAGAGACAGAACACTTAGAGTTCCAAGCAAAAGAGGCTCAAGAACTTGCAGATAGATACAGTTTGATGCTAAATTCCGAATGCATAATCTTGGAGTTAGCCGTAGAAATCCTTAACCGATGTGCTAATGGTCAAATGATTTTCCTCTGTACTTCTCTCGTACCAAGAGCACCAGAAGAAAATCCTCAGATGGACGCAGTAGCAAAATTAATCGCCGAGGCAGAACACTTGGAGTTCCAAGCAAAAGAGGCACAAGAACTTGCAGATAAACACGCCCAGTTGCTAGAATTAGAAAGCGAGATAATCTTGCAGTTAGCCGTAGAAATCTTTAACCGATGTGCTAATGGTCAAAAGATTTTCCTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.36

Weight (kDa)

4.58

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54230 AT1G54240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 232, 694
AclI AACGTT 1 cut(s) 21
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 2 cut(s) 128, 403
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 4 cut(s) 35, 146, 481, 492
AflIII ACRYGT 2 cut(s) 36, 256
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 65, 127, 191
AhlI ACTAGT 2 cut(s) 196, 325
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 293
ApoI RAATTY 2 cut(s) 128, 403
AseI ATTAAT 1 cut(s) 539
AsiGI ACCGGT 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 502
BccI CCATC 3 cut(s) 89, 110, 514
BceAI ACGGC 2 cut(s) 416, 632
BcoDI GTCTC 1 cut(s) 329
BcuI ACTAGT 2 cut(s) 196, 325
BfaI CTAG 5 cut(s) 165, 197, 270, 326, 614
BfmI CTRYAG 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 3 cut(s) 4, 237, 387
BmuI ACTGGG 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 2 cut(s) 141, 154
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 106, 607
Bse21I CCTNAGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 546
BseMII CTCAG 2 cut(s) 317, 530
BseNI ACTGG 2 cut(s) 106, 607
BshTI ACCGGT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 2 cut(s) 142, 155
BsmAI GTCTC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 2 cut(s) 232, 694
BspCNI CTCAG 2 cut(s) 316, 529
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 106, 607
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 303, 346, 516
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 365, 578
BstSFI CTRYAG 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 141
CseI GACGC 1 cut(s) 533
Csp6I GTAC 4 cut(s) 34, 145, 480, 491
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 2 cut(s) 92, 238
CviJI RGCY 4 cut(s) 68, 368, 431, 647
CviKI_1 RGCY 4 cut(s) 68, 368, 431, 647
CviQI GTAC 4 cut(s) 34, 145, 480, 491
DdeI CTNAG 3 cut(s) 303, 346, 516
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DraIII CACNNNGTG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 2 cut(s) 95, 241
FaiI YATR 4 cut(s) 56, 93, 239, 416
FatI CATG 2 cut(s) 91, 237
FspBI CTAG 5 cut(s) 165, 197, 270, 326, 614
HapII CCGG 2 cut(s) 142, 155
HgaI GACGC 1 cut(s) 533
Hin1II CATG 2 cut(s) 95, 241
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 5, 278
HpaII CCGG 2 cut(s) 142, 155
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 2 cut(s) 409, 519
Hpy188III TCNNGA 2 cut(s) 107, 371
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 5 cut(s) 21, 38, 147, 256, 295
HpyCH4V TGCA 5 cut(s) 11, 380, 414, 593, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 578
HpyF3I CTNAG 3 cut(s) 303, 346, 516
HpySE526I ACGT 5 cut(s) 21, 38, 147, 256, 295
Hsp92II CATG 2 cut(s) 95, 241
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 7 cut(s) 87, 155, 168, 276, 290, 516, 620
LweI GCATC 3 cut(s) 4, 237, 387
MaeI CTAG 5 cut(s) 165, 197, 270, 326, 614
MaeII ACGT 5 cut(s) 21, 38, 147, 256, 295
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 2 cut(s) 287, 518
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 5 cut(s) 128, 160, 403, 536, 617
MnlI CCTC 8 cut(s) 173, 178, 312, 358, 485, 525, 541, 571
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 5 cut(s) 41, 132, 444, 539, 660
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 142, 155
Mva1269I GAATGC 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 365, 578
NdeII GATC 1 cut(s) 298
NlaIII CATG 2 cut(s) 95, 241
NmeAIII GCCGAG 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 416
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 5, 278
PinAI ACCGGT 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 148
PshBI ATTAAT 1 cut(s) 539
Psp1406I AACGTT 1 cut(s) 21
PstI CTGCAG 1 cut(s) 13
RsaI GTAC 4 cut(s) 35, 146, 481, 492
RsaNI GTAC 4 cut(s) 34, 145, 480, 491
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 5 cut(s) 41, 132, 444, 539, 660
Sau3AI GATC 1 cut(s) 298
SduI GDGCHC 1 cut(s) 502
SetI ASST 9 cut(s) 24, 29, 41, 70, 150, 189, 225, 259, 298
SfaNI GCATC 3 cut(s) 4, 237, 387
SfcI CTRYAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SpeI ACTAGT 2 cut(s) 196, 325
Sse9I AATT 5 cut(s) 128, 160, 403, 536, 617
SsiI CCGC 2 cut(s) 232, 694
SspMI CTAG 5 cut(s) 165, 197, 270, 326, 614
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 5 cut(s) 24, 41, 150, 259, 298
TaqI TCGA 1 cut(s) 114
TasI AATT 5 cut(s) 128, 160, 403, 536, 617
TatI WGTACW 2 cut(s) 33, 479
TfiI GAWTC 2 cut(s) 5, 278
Tru1I TTAA 5 cut(s) 41, 132, 444, 539, 660
Tru9I TTAA 5 cut(s) 41, 132, 444, 539, 660
TspDTI ATGAA 1 cut(s) 102
VspI ATTAAT 1 cut(s) 539
XapI RAATTY 2 cut(s) 128, 403
XspI CTAG 5 cut(s) 165, 197, 270, 326, 614
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.