Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027179

Physical Location & Seq

Genomic Coordinates Forward (+)

20252718 .. 20254708

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTTCTGGAGATACAAAATCGGATGCGAACAACGTTACTTATGGAGACCTTCCTTCTTCTCCAGCGGCTACGGATTCTTCAGAACCTTCTTCCTATGCTGAACAGCTTGAAAGGCTCATGATGATAGATTCAGAAGAAGACCGGGGTCCCTCTGGGTTTACGACTGATGAATTGATCTTTCAGGCTTTAGAAACAGTCTACGAGAATCATAATGGTCTTGATGTCGATGCGATTTTCACTTTTATCAAGGAAAGGAACGAGTTACAGGAAGATTTTAGGGAGCGGTTGGAAAACCAGCTGAGATATCTAGTTTCTGAAGGCCAAGTATACAAGGTAGGAAACCTCTACAAGATCCCCCGTGGTGTATTTGATACTCCAGTTGTGTCAGTAGGAGATTCAAATCAAAGAGAAACCATGGATCCAGAAGATTCCACGGGCACAAAGGCACAAGACACACCAAGTACTTGTGCTTCTTTCGCACCACCAACAACAGAAGTAGATCCTCGGATAATCGCATTAGCAAAAGAAGTCGCAGAGGCAGAACACTTGGAGTTGGAAGCAAAAGAGGCATACGAACTTGCAGATAAACACGCCCAGTTGCTAAAATTAGAAAGCAACATAACCTTGCAGTTAGCCGTAGAAATCCTTAATCGATGTGCTAACGGTGAAAAGATTTTCCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

229

Amino Acids

25.44

Weight (kDa)

4.34

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54230 AT1G54240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AccI	GTMKAC	2 cut(s)	201, 330
AciI	CCGC	2 cut(s)	68, 286
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	4 cut(s)	349, 416, 429, 497
AcuI	CTGAAG	2 cut(s)	66, 339
AfaI	GTAC	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	113, 402
AluBI	AGCT	2 cut(s)	109, 301
AluI	AGCT	2 cut(s)	109, 301
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	4 cut(s)	349, 416, 429, 497
AoxI	GGCC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BamHI	GGATCC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
BbsI	GAAGAC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	150, 151, 423
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	16, 220
BmuI	ACTGGG	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	3 cut(s)	30, 48, 363
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	5 cut(s)	145, 361, 417, 435, 506
Bse1I	ACTGG	2 cut(s)	380, 598
Bse8I	GATNNNNATC	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	655
BseDI	CCNNGG	5 cut(s)	145, 361, 417, 435, 506
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	380, 598
BseSI	GKGCMC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	4 cut(s)	177, 354, 421, 502
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	2 cut(s)	68, 286
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	150, 151, 423
BspPI	GGATC	4 cut(s)	349, 416, 429, 497
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	380, 598
BssECI	CCNNGG	5 cut(s)	145, 361, 417, 435, 506
BssMI	GATC	4 cut(s)	177, 354, 421, 502
BssNAI	GTATAC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	199, 668
BstDEI	CTNAG	1 cut(s)	302
BstDSI	CCRYGG	3 cut(s)	361, 417, 435
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	180, 357, 424, 505
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	177, 354, 421, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 479, 569
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	3 cut(s)	354, 421, 502
BstYI	RGATCY	3 cut(s)	354, 421, 502
BstZ17I	GTATAC	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	655
BtgI	CCRYGG	3 cut(s)	361, 417, 435
BtsCI	GGATG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	2 cut(s)	121, 418
CviJI	RGCY	7 cut(s)	71, 109, 118, 188, 301, 324, 638
CviKI_1	RGCY	7 cut(s)	71, 109, 118, 188, 301, 324, 638
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	4 cut(s)	179, 356, 423, 504
DpnII	GATC	4 cut(s)	177, 354, 421, 502
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	66, 339
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	124, 421
FaiI	YATR	8 cut(s)	45, 99, 122, 213, 331, 419, 574, 623
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	120, 417
FblI	GTMKAC	2 cut(s)	201, 330
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	3 cut(s)	30, 48, 363
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	2 cut(s)	124, 421
HinfI	GANTC	5 cut(s)	77, 131, 208, 398, 431
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	3 cut(s)	162, 202, 331
Hpy188I	TCNGA	5 cut(s)	25, 85, 136, 319, 510
Hpy188III	TCNNGA	4 cut(s)	9, 121, 221, 425
Hpy8I	GTNNAC	3 cut(s)	162, 202, 331
HpyAV	CCTTC	4 cut(s)	62, 66, 99, 314
HpyCH4III	ACNGT	2 cut(s)	199, 668
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	584, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 479, 569
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	124, 421
KflI	GGGWCCC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	177, 354, 421, 502
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	78, 141, 158, 170, 254, 311, 393, 438, 611
LweI	GCATC	2 cut(s)	16, 220
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	37, 264
MalI	GATC	4 cut(s)	179, 356, 423, 504
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	177, 354, 421, 502
MboII	GAAGA	7 cut(s)	51, 72, 84, 149, 152, 284, 440
MflI	RGATCY	3 cut(s)	354, 421, 502
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	2 cut(s)	173, 608
MmeI	TCCRAC	2 cut(s)	270, 537
MnlI	CCTC	5 cut(s)	163, 356, 516, 532, 562
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	68, 301
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	115, 479, 569
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	177, 354, 421, 502
NlaIII	CATG	2 cut(s)	124, 421
NlaIV	GGNNCC	3 cut(s)	150, 151, 423
PagI	TCATGA	1 cut(s)	120
PfeI	GAWTC	5 cut(s)	77, 131, 208, 398, 431
PkrI	GCNGC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	150, 151, 423
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	3 cut(s)	354, 421, 502
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	177, 354, 421, 502
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	8 cut(s)	39, 54, 91, 111, 303, 339, 348, 629
SfaNI	GCATC	2 cut(s)	16, 220
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	173, 608
SsiI	CCGC	2 cut(s)	68, 286
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	199, 668
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	228, 655
TasI	AATT	2 cut(s)	173, 608
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	5 cut(s)	77, 131, 208, 398, 431
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	149
XmiI	GTMKAC	2 cut(s)	201, 330
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.