AT1G54470

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004644
Physical Location & Seq
Forward (+)
20344698 .. 20348097
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54470.1

Sequence Viewer

Length: 1374 bp
ATGAAGACTAATTTTGTTATTCTACTTCTTCTCCTCTGTGTTTTTGCGATCAGCCCTAGTCAACAAGAAGAGATCAATCAACATAATCCAGGGATATATCATCAAAAGCTGCTATACAAGGTCCAACAATGGAGAACATCTTTGAAAGAATCAAATTCTGTAGAACTCAAGCTATCTTTAGCAGCCATTGTGGCTGGAGTGTTATACTTCCTTGCTGCCTTAATCTCGAGCGCATGTGGAATCGGCAGTGGAGGTTTATTCATTCCAATCACGACTCTAGTTTCACGGCTAGACTTGAAAACAGGGAAGCGTTTCTTGGGCCAATACTTGATATGGGTGATATTATTGTTGGGGCAGCTCCATGAATGCAAAAGCTGCATTGAGAAAGAAAGAGTAGCTTTGTTGGATTTTAAGAAATATTGGATGTCCATTACGCAAGAATCGGACTTGGACTATGTTTTCCCTACTTGGAATAATGACACAAAGAGCGATTGTTGCCAGTGGGAGAGCATTATGTGCAATCCTACAAGTGGGCGGCTTATCAGGCTTCACGTTGGTGCTTCGAATTTAAAAGAGAATTCTCTACTAAATATTTCTTTACTGCATCCCTTTGAAGAGGTTCGAAGTCTAGAATTATCAGCTGGGCTCAATGGCTTCGTTGATAATGTTGAAGGTTATAAAAGCTTAAGGAAATTAAAAAATTTGGAGATTCTGGATCTCTCTTATAATAATAGATTCAACAACAACATACTTCCATTTATTAATGCTGCTACGTCACTTACAAGCCTTTCTCTTCAAAATAACTCCATGGAAGGCCCTTTCCCTTTTGAAGAAATAAAAGACTTGACAAACTTGAAACTATTGGATCTTAGTAGAAACATACTAAAAGGCCCCATGCAAGGGTTGACTCATCTGAAAAAGCTAAAAGCTTTGGATCTAAGTAACAATGTTTTTTCGAGCATAATGGAATTGCAAGTAGTTTGTGAAATGAAGAATTTGTGGGAGCTTGATCTTCGTGAAAATAAATTTGTAGGTCAGCTTCCTCTTTGTTTAGGTAGATTAAACAAGCTAAGGGTTCTTGATTTGTCATCCAACCAGCTAAATGGAAATCTACCATCTACTTTCAACAGACTCGAGTCCCTTGAATATCTATCATTATTAGATAACAACTTCACCGGCTTCTTCTCATTTGATCCACTCGCCAACCTCACAAAGCTTAAGGTGTTCAAACTTTCATCAACATCAGATATGTTGCAAATCAAGACAGAGAGTGAGCCAAAATATCAATTTCAACTAAGTGTTGTTGTAATAAGAGTTTGCAGCTTGGAGAAAATCCCTTCCTTTCTGGTTGTTGGCAAACAATCCGGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

457

Amino Acids

51.66

Weight (kDa)

8.4

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 129 - 174 5.1e-06 Leucine rich repeat N-terminal domain
LRR_Zer-1 PF25013 228 - 293 8.4e-06 Zer-1-like, Leucine-rich repeats
LRR_14 PF23598 300 - 414 6e-08 Leucine-rich repeat region
LRR_8 PF13855 356 - 407 3.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 678, 726
AccIII TCCGGA 1 cut(s) 1364
AciI CCGC 1 cut(s) 535
AclWI GGATC 4 cut(s) 723, 873, 942, 1187
AcsI RAATTY 6 cut(s) 154, 565, 577, 700, 994, 1025
AfiI CCNNNNNNNGG 3 cut(s) 530, 899, 900
AflII CTTAAG 2 cut(s) 685, 1217
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AleI CACNNNNGTG 1 cut(s) 555
AlwI GGATC 4 cut(s) 723, 873, 942, 1187
Ama87I CYCGRG 2 cut(s) 226, 1133
Aor13HI TCCGGA 1 cut(s) 1364
AoxI GGCC 3 cut(s) 319, 814, 889
ApeKI GCWGC 7 cut(s) 109, 182, 215, 355, 375, 767, 1320
ApoI RAATTY 6 cut(s) 154, 565, 577, 700, 994, 1025
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 2 cut(s) 311, 618
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 4 cut(s) 121, 319, 815, 890
AsuHPI GGTGA 2 cut(s) 349, 1165
AsuII TTCGAA 2 cut(s) 563, 622
AvaI CYCGRG 2 cut(s) 226, 1133
AvaII GGWCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 648
BarI GAAGNNNNNNTAC 2 cut(s) 1023, 1055
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 96, 194, 202, 362, 367, 754, 1332
BccI CCATC 1 cut(s) 1123
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 90
BfaI CTAG 4 cut(s) 57, 278, 290, 629
BfmI CTRYAG 1 cut(s) 159
BfrI CTTAAG 2 cut(s) 685, 1217
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 8 cut(s) 110, 183, 216, 356, 376, 536, 768, 1321
BlsI GCNGC 8 cut(s) 111, 184, 217, 357, 377, 537, 769, 1322
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 2 cut(s) 226, 1133
BmgT120I GGNCC 4 cut(s) 121, 319, 815, 890
BmiI GGNNCC 1 cut(s) 892
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 613
BoxI GACNNNNGTC 1 cut(s) 1135
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 1070
Bpu14I TTCGAA 2 cut(s) 563, 622
BpuEI CTTGAG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 89, 807
BsaWI WCCGGW 1 cut(s) 1364
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 899, 900
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 1364
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 89, 807
BseGI GGATG 3 cut(s) 429, 604, 1088
BseLI CCNNNNNNNGG 3 cut(s) 530, 899, 900
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 7 cut(s) 96, 194, 202, 362, 367, 754, 1332
BseYI CCCAGC 1 cut(s) 641
BshFI GGCC 3 cut(s) 321, 816, 891
BsiHKCI CYCGRG 2 cut(s) 226, 1133
BsiSI CCGG 2 cut(s) 1176, 1365
BslFI GGGAC 1 cut(s) 1123
BslI CCNNNNNNNGG 3 cut(s) 530, 899, 900
BsmFI GGGAC 1 cut(s) 1123
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 3 cut(s) 321, 816, 891
BsoBI CYCGRG 2 cut(s) 226, 1133
Bsp119I TTCGAA 2 cut(s) 563, 622
Bsp1286I GDGCHC 1 cut(s) 648
Bsp13I TCCGGA 1 cut(s) 1364
Bsp143I GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 1 cut(s) 535
BspANI GGCC 3 cut(s) 321, 816, 891
BspEI TCCGGA 1 cut(s) 1364
BspLI GGNNCC 1 cut(s) 892
BspPI GGATC 4 cut(s) 723, 873, 942, 1187
BspT104I TTCGAA 2 cut(s) 563, 622
BspTI CTTAAG 2 cut(s) 685, 1217
BsrFI RCCGGY 1 cut(s) 1175
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 2 cut(s) 89, 807
BssMI GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
BssT1I CCWWGG 1 cut(s) 807
Bst2UI CCWGG 1 cut(s) 90
Bst6I CTCTTC 3 cut(s) 63, 609, 798
BstAFI CTTAAG 2 cut(s) 685, 1217
BstAPI GCANNNNNTGC 2 cut(s) 375, 516
BstBI TTCGAA 2 cut(s) 563, 622
BstDEI CTNAG 4 cut(s) 869, 938, 1070, 1295
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 429, 604, 1088
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 7 cut(s) 51, 75, 718, 868, 937, 1012, 1195
BstMBI GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
BstMWI GCNNNNNNNGC 5 cut(s) 191, 375, 495, 516, 544
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 237
BstPAI GACNNNNGTC 1 cut(s) 1135
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 7 cut(s) 96, 194, 202, 362, 367, 754, 1332
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 3 cut(s) 715, 865, 934
BstXI CCANNNNNNTGG 1 cut(s) 1103
BstYI RGATCY 3 cut(s) 715, 865, 934
BsuRI GGCC 3 cut(s) 321, 816, 891
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 3 cut(s) 429, 604, 1088
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 506
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 1175
Cfr13I GGNCC 4 cut(s) 121, 319, 815, 890
CviAII CATG 4 cut(s) 234, 362, 808, 895
DdeI CTNAG 4 cut(s) 869, 938, 1070, 1295
DpnI GATC 7 cut(s) 50, 74, 717, 867, 936, 1011, 1194
DpnII GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
DraI TTTAAA 1 cut(s) 570
Eam1104I CTCTTC 3 cut(s) 63, 609, 798
EarI CTCTTC 3 cut(s) 63, 609, 798
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 2 cut(s) 226, 1133
EcoO109I RGGNCCY 2 cut(s) 815, 890
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 807
FaeI CATG 4 cut(s) 237, 365, 811, 898
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 382, 414
FaqI GGGAC 1 cut(s) 1123
FatI CATG 4 cut(s) 233, 361, 807, 894
Fnu4HI GCNGC 8 cut(s) 110, 183, 216, 356, 376, 536, 768, 1321
FokI GGATG 3 cut(s) 436, 591, 1075
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 8 cut(s) 110, 183, 216, 356, 376, 536, 768, 1321
FspBI CTAG 4 cut(s) 57, 278, 290, 629
GlaI GCGC 1 cut(s) 232
GluI GCNGC 8 cut(s) 110, 183, 216, 356, 376, 536, 768, 1321
GsaI CCCAGC 1 cut(s) 645
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 321, 816, 891
HapII CCGG 2 cut(s) 1176, 1365
HhaI GCGC 1 cut(s) 233
Hin1II CATG 4 cut(s) 237, 365, 811, 898
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 2 cut(s) 62, 906
HindII GTYRAC 2 cut(s) 62, 906
HindIII AAGCTT 3 cut(s) 682, 927, 1214
HinfI GANTC 9 cut(s) 149, 240, 274, 440, 709, 735, 907, 1131, 1136
HpaII CCGG 2 cut(s) 1176, 1365
HphI GGTGA 2 cut(s) 349, 1165
Hpy166II GTNNAC 2 cut(s) 62, 906
Hpy188I TCNGA 3 cut(s) 445, 915, 1246
Hpy188III TCNNGA 8 cut(s) 226, 271, 629, 713, 1016, 1079, 1261, 1365
Hpy8I GTNNAC 2 cut(s) 62, 906
HpyAV CCTTC 3 cut(s) 665, 806, 1347
HpyCH4IV ACGT 2 cut(s) 552, 773
HpyCH4V TGCA 8 cut(s) 369, 378, 519, 604, 898, 973, 1255, 1320
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 375, 495, 516, 544
HpyF3I CTNAG 4 cut(s) 869, 938, 1070, 1295
HpySE526I ACGT 2 cut(s) 552, 773
Hsp92II CATG 4 cut(s) 237, 365, 811, 898
HspAI GCGC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 1364
Kzo9I GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
LmnI GCTCC 2 cut(s) 363, 1003
Lsp1109I GCAGC 7 cut(s) 96, 194, 202, 362, 367, 754, 1332
LweI GCATC 1 cut(s) 613
MaeI CTAG 4 cut(s) 57, 278, 290, 629
MaeII ACGT 2 cut(s) 552, 773
MaeIII GTNAC 2 cut(s) 774, 941
MalI GATC 7 cut(s) 50, 74, 717, 867, 936, 1011, 1194
MboI GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
MboII GAAGA 9 cut(s) 16, 20, 80, 626, 785, 842, 1003, 1004, 1174
MflI RGATCY 3 cut(s) 715, 865, 934
MhlI GDGCHC 1 cut(s) 648
MlyI GAGTC 4 cut(s) 268, 901, 1125, 1145
MmeI TCCRAC 3 cut(s) 148, 384, 1116
MnlI CCTC 5 cut(s) 44, 245, 610, 1053, 1217
MroI TCCGGA 1 cut(s) 1364
MroXI GAANNNNTTC 2 cut(s) 311, 618
MseI TTAA 9 cut(s) 221, 411, 569, 686, 695, 762, 1061, 1218, 1372
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 2 cut(s) 685, 1217
MspI CCGG 2 cut(s) 1176, 1365
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 5 cut(s) 191, 375, 495, 516, 544
NcoI CCATGG 1 cut(s) 807
NdeII GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
NlaIII CATG 4 cut(s) 237, 365, 811, 898
NlaIV GGNNCC 1 cut(s) 892
NmuCI GTSAC 1 cut(s) 774
NspI RCATGY 1 cut(s) 237
NspV TTCGAA 2 cut(s) 563, 622
OliI CACNNNNGTG 1 cut(s) 555
PaeR7I CTCGAG 2 cut(s) 226, 1133
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 2 cut(s) 311, 618
PfeI GAWTC 5 cut(s) 149, 240, 440, 709, 735
PkrI GCNGC 8 cut(s) 111, 184, 217, 357, 377, 537, 769, 1322
PleI GAGTC 4 cut(s) 268, 901, 1125, 1144
PpsI GAGTC 4 cut(s) 268, 901, 1125, 1144
PshAI GACNNNNGTC 1 cut(s) 1135
PshBI ATTAAT 1 cut(s) 762
PsiI TTATAA 2 cut(s) 678, 726
Psp6I CCWGG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 641
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 892
PspPI GGNCC 4 cut(s) 121, 319, 815, 890
PspXI VCTCGAGB 1 cut(s) 1133
PsuI RGATCY 3 cut(s) 715, 865, 934
PvuII CAGCTG 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 555
SaqAI TTAA 9 cut(s) 221, 411, 569, 686, 695, 762, 1061, 1218, 1372
SatI GCNGC 8 cut(s) 110, 183, 216, 356, 376, 536, 768, 1321
Sau3AI GATC 7 cut(s) 48, 72, 715, 865, 934, 1009, 1192
Sau96I GGNCC 4 cut(s) 121, 319, 815, 890
SchI GAGTC 4 cut(s) 268, 901, 1125, 1145
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 2 cut(s) 226, 1133
SfuI TTCGAA 2 cut(s) 563, 622
SinI GGWCC 1 cut(s) 121
SlaI CTCGAG 2 cut(s) 226, 1133
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 5 cut(s) 167, 226, 685, 1133, 1217
SmoI CTYRAG 5 cut(s) 167, 226, 685, 1133, 1217
SsiI CCGC 1 cut(s) 535
SspI AATATT 2 cut(s) 419, 592
SspMI CTAG 4 cut(s) 57, 278, 290, 629
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 807
TaiI ACGT 2 cut(s) 555, 776
TaqI TCGA 5 cut(s) 227, 563, 622, 956, 1134
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 5 cut(s) 149, 240, 440, 709, 735
Tru1I TTAA 9 cut(s) 221, 411, 569, 686, 695, 762, 1061, 1218, 1372
Tru9I TTAA 9 cut(s) 221, 411, 569, 686, 695, 762, 1061, 1218, 1372
TscAI CASTG 2 cut(s) 253, 506
TseFI GTSAC 1 cut(s) 774
TseI GCWGC 7 cut(s) 109, 182, 215, 355, 375, 767, 1320
Tsp45I GTSAC 1 cut(s) 774
TspDTI ATGAA 5 cut(s) 17, 250, 378, 1004, 1224
TspRI CASTG 2 cut(s) 253, 506
Vha464I CTTAAG 2 cut(s) 685, 1217
VpaK11BI GGWCC 1 cut(s) 121
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 6 cut(s) 154, 565, 577, 700, 994, 1025
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 1 cut(s) 237
XhoI CTCGAG 2 cut(s) 226, 1133
XmnI GAANNNNTTC 2 cut(s) 311, 618
XspI CTAG 4 cut(s) 57, 278, 290, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.