AT1G54475

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004644
Physical Location & Seq
Forward (+)
20348397 .. 20349032
636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54475.1

Sequence Viewer

Length: 630 bp
ATGAAGCGAAGGTATGATTCTTATTTTGGAGCAACTGAATTCAACAATGACGTACTTGATTATATGTATGGAATGGACCTATCAAGCAATGAGTTAAGTGGGGTTATCCCAGCAGAGCTTGGAAGTCTCTCAAAGCTACGAGTCATGAATTTATCTTGCAACTTCTTGTCCAGTTCAATACCATCTAGCTTCTCCAATCTCAAGGATATTGAGAGCCTTGACCTTTCGCATAACATGTTACAAGGAAGTATTCCTCAACAACTAACCAACCTTTCTTCTCTTGTTGTCTTTGATGTGTCTTACAATAATTTATCCGGAATCATTCCCCAAGGAAGGCAGTTTAATACCTTTGACGAGAAAAGCTACTTGGGAAATCCTCTTCTTTGTGGACCACCGACCAATAGAAGTTGTGATGCTAAGAAGACCTCAGATGAATCAGAAAATGGAGGAGAAGAAGAAGATGATGAAGCTCCTGTTGATATGTTGGCCTTCTATTTTAGTAGTGCTTCGACTTATGTAACTACATTGATAGGCATTTTTATACTTATGTGCTTTGATTGTCCTTTGCGTCGAGCATGGCTCCGCATTGTCGATGCTTCCATCGCCTCAGTCAAAAGTATGTTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

209

Amino Acids

23.14

Weight (kDa)

4.44

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 25 - 80 1.5e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 1 cut(s) 583
AcsI RAATTY 2 cut(s) 38, 148
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 43, 177
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 5 cut(s) 118, 136, 189, 363, 470
AluI AGCT 5 cut(s) 118, 136, 189, 363, 470
Alw26I GTCTC 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 1 cut(s) 486
ApoI RAATTY 2 cut(s) 38, 148
AspS9I GGNCC 2 cut(s) 76, 389
AvaII GGWCC 2 cut(s) 76, 389
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 2 cut(s) 190, 608
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 76, 389
BmgT120I GGNCC 2 cut(s) 76, 389
BmiI GGNNCC 1 cut(s) 581
BmsI GCATC 2 cut(s) 403, 583
BpiI GAAGAC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 564, 596
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 94
BseAI TCCGGA 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 441, 621
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 462
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 488
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 488
Bsp13I TCCGGA 1 cut(s) 314
BspACI CCGC 1 cut(s) 583
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 440, 620
BspEI TCCGGA 1 cut(s) 314
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 417, 427, 607
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 586
CciI TCATGA 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 76, 389
CseI GACGC 1 cut(s) 557
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 145, 235, 576
CviJI RGCY 8 cut(s) 118, 136, 189, 216, 363, 470, 488, 580
CviKI_1 RGCY 8 cut(s) 118, 136, 189, 216, 363, 470, 488, 580
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 3 cut(s) 417, 427, 607
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 76, 389
EcoRI GAATTC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 148, 238, 579
FatI CATG 3 cut(s) 144, 234, 575
FspBI CTAG 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 488
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 557
Hin1II CATG 3 cut(s) 148, 238, 579
HinfI GANTC 4 cut(s) 17, 141, 318, 434
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 2 cut(s) 430, 439
Hpy188III TCNNGA 2 cut(s) 145, 315
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 3 cut(s) 3, 327, 499
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 3 cut(s) 417, 427, 607
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 3 cut(s) 148, 238, 579
Kpn2I TCCGGA 1 cut(s) 314
LmnI GCTCC 3 cut(s) 29, 475, 585
LpnPI CCDG 4 cut(s) 123, 184, 328, 486
LweI GCATC 2 cut(s) 403, 583
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 237, 517
MboII GAAGA 6 cut(s) 267, 371, 433, 464, 467, 470
MluCI AATT 3 cut(s) 38, 148, 307
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 5 cut(s) 264, 387, 436, 440, 616
MroI TCCGGA 1 cut(s) 314
MseI TTAA 3 cut(s) 95, 342, 628
MspI CCGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 602
NlaIII CATG 3 cut(s) 148, 238, 579
NlaIV GGNNCC 1 cut(s) 581
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 144
PciI ACATGT 1 cut(s) 234
PfeI GAWTC 3 cut(s) 17, 318, 434
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PscI ACATGT 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 581
PspPI GGNCC 2 cut(s) 76, 389
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 3 cut(s) 95, 342, 628
Sau96I GGNCC 2 cut(s) 76, 389
SchI GAGTC 1 cut(s) 150
SfaNI GCATC 2 cut(s) 403, 583
SinI GGWCC 2 cut(s) 76, 389
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 3 cut(s) 38, 148, 307
SsiI CCGC 1 cut(s) 583
SspMI CTAG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 328
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 509, 571, 591
TasI AATT 3 cut(s) 38, 148, 307
TfiI GAWTC 3 cut(s) 17, 318, 434
Tru1I TTAA 3 cut(s) 95, 342, 628
Tru9I TTAA 3 cut(s) 95, 342, 628
TspDTI ATGAA 4 cut(s) 17, 161, 447, 480
VpaK11BI GGWCC 2 cut(s) 76, 389
XapI RAATTY 2 cut(s) 38, 148
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.