Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018293

Physical Location & Seq

Genomic Coordinates Forward (+)

22787012 .. 22788380

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGATCGTCCCTGTTCGTTGTTTTACTTGTGGAAAGGTGATTGGGAACAAATGGGACACATACCTTGAACTTCTCCAGGCTGATTACGCTGAAGGGGATGCTCTTGACGCGCTTGGATTAGTCCGTTACTGCTGCAGGCGTATGCTTATGACTCATGTCGATCTAATCGAAAAGCTTCTAAACTACAACACTATGGAGAAATCCGACCCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0008270 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046872 GO:0046914 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_N

Protein Analysis

71

Amino Acids

8.17

Weight (kDa)

5.15

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_N	PF01194	2 - 59	1e-31	RNA polymerases N / 8 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61700
rosa_chinensis	RchiOBHm_Chr4g0441961
rosa_multiflora	Rmu_sc0002501.1_g000026 Rmu_sc0011990.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382800
rosa_rugosa	Rorug04G0337300
rosa_samantha	Rh4AG389200 Rh4BG402700 Rh4CG417900
rosa_wichuraiana	Rw4G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	88
BoxI	GACNNNNGTC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	3, 160
BspFNI	CGCG	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	137
BssMI	GATC	2 cut(s)	3, 160
Bst2UI	CCWGG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	6, 163
BstMBI	GATC	2 cut(s)	3, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 107
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	112
CseI	GACGC	1 cut(s)	116
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	2 cut(s)	80, 175
CviKI_1	RGCY	2 cut(s)	80, 175
DpnI	GATC	2 cut(s)	5, 162
DpnII	GATC	2 cut(s)	3, 160
Eco57I	CTGAAG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	158
FaiI	YATR	5 cut(s)	61, 143, 149, 156, 194
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	133
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 107
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	3, 160
LpnPI	CCDG	4 cut(s)	24, 62, 89, 121
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	5, 162
MboI	GATC	2 cut(s)	3, 160
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	86, 107
NdeII	GATC	2 cut(s)	3, 160
NlaIII	CATG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	214
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	3, 160
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	3 cut(s)	39, 66, 177
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	133
Sse9I	AATT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	2 cut(s)	159, 168
TasI	AATT	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TseI	GCWGC	1 cut(s)	132
TspGWI	ACGGA	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.