Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0018293

Physical Location & Seq

Genomic Coordinates Forward (+)

51087521 .. 51088771

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0337300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGTTTCGAGTTTTATTAGTAATGGTTCATGGGATTTGCCTCAGCTTCTACACTTCTATTTTCCATCCTTGTGTGACTGGATTAGTCAAGTTCCAATTGCCGCAGATCCTTCAGCAGAAGACAAACTTATTTGGACTGCTTCCTCTTCTGGTGAGTTAACTGCAAAGCATGCTTACATATTTTTGCGGCGGCCTTCTCCTTCAGTAGCATGGGGCAAATCATTATGGTCTAAATTTATCTTGCCTCGAATGTCTCTGCTAGCTTGGAAGGTTTTAAGAGGTAGAGTGATTTCTGATGATTTTTTACAGCGAAGGGGAGTAGCTTTGGTCTCTCGTTGTGATCTTTGTGGTATCGATTCTGAATCTCTTGATCACATTTTTCTTAATTGCTCTTTTACGGCTGCAATATGGCGTCATTTTACTTCTCTCTTTGAGTTGGGTGGAGTTCCTCCCTCAATTTTGGAGGGTTTACAAGTGGGTATGGTTGTAGGAAGAAGTGGACAGCTTAAAGACTTATGGTTGATTTGTTTCACTTCAATATTGTGGTTTGTATGGAATGCTAGAAACAAAATGAGACATGAGGGGAAGGTGTTTTCAGTTGGTACTATTTGTAGTCTTATCTCTTGTCATATTCAAGTAGCTAGTCGTTTGGCAACAGGTACCATGCATAATTCCATCCAAGATCTACGCATTTTGAAAGCCTTTGGGGCCCATTGCAGATTGCGTCGTGCCCCTAGAGTGATAGAGGTGAATTGGCATCCCCCATTGATTGGTTGGGTTAAGATTAATTCTGATGGAGCTTGGAAACATGATGAGGGGGTTGGAGGTTATGGGGCTGTGTTTAGGGATCATATGGGACGTTTTCTTGGAGCTTTTGCTTCTAATCTTGAGATTCCTAGTTCCATTGCGGCAGAGGTGATGGCTGTGATTAAGGCAATTGAGCTGGCATGGGTTCGTGATTGGAAGCACGTGTGGCTAGAAGTGGACTCTTCTCTTATTCTGGATTTTATTAAATCTCCTTTGTTGGTCCCCTGGCAATTTCGTATTAGCTGGCTCAATTGCTTGTTCAAGATTTCTCAAATGACTTTTCGTGTATCTCATATTTTTCGTGAAGGTAATAAGGTAGCTGATGCTTTGGCGAATTATGGTACGACTGCTCCTAATATGGTGTGGTGGGATACTCCACCATCTTTTCTTTTATCGCATTGTCAGAGTGACCAATTGGGTTTTCCCCAATTTCGGTTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0008270 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046872 GO:0046914 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_N

Protein Analysis

416

Amino Acids

47.07

Weight (kDa)

9.12

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	54 - 137	3.2e-20	zinc-binding in reverse transcriptase
RVT_3	PF13456	263 - 382	6.6e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61700
rosa_chinensis	RchiOBHm_Chr4g0441961
rosa_multiflora	Rmu_sc0002501.1_g000026 Rmu_sc0011990.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382800
rosa_rugosa	Rorug04G0337300
rosa_samantha	Rh4AG389200 Rh4BG402700 Rh4CG417900
rosa_wichuraiana	Rw4G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	770
AciI	CCGC	4 cut(s)	102, 187, 190, 908
AclWI	GGATC	2 cut(s)	101, 855
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	96, 186
AcvI	CACGTG	1 cut(s)	970
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	3 cut(s)	604, 661, 1150
AfiI	CCNNNNNNNGG	2 cut(s)	770, 1239
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	4 cut(s)	537, 635, 697, 1069
AjnI	CCWGG	1 cut(s)	1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	1212, 1244
Alw26I	GTCTC	3 cut(s)	258, 334, 568
AlwI	GGATC	2 cut(s)	101, 855
AoxI	GGCC	2 cut(s)	191, 708
ApaI	GGGCCC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	233
AseI	ATTAAT	1 cut(s)	786
Asp718I	GGTACC	1 cut(s)	659
AspS9I	GGNCC	3 cut(s)	708, 709, 1027
AsuHPI	GGTGA	3 cut(s)	164, 760, 928
AsuNHI	GCTAGC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	2 cut(s)	712, 733
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	712
BbrPI	CACGTG	1 cut(s)	970
BbsI	GAAGAC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	5 cut(s)	73, 683, 788, 913, 1195
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	1033
BciVI	GTATCC	1 cut(s)	1171
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	258, 334, 568
BfaI	CTAG	6 cut(s)	260, 561, 642, 735, 897, 977
BfuI	GTATCC	1 cut(s)	1171
BglI	GCCNNNNNGGC	1 cut(s)	707
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	5 cut(s)	102, 188, 191, 402, 909
BlsI	GCNGC	5 cut(s)	103, 189, 192, 403, 910
Bme1390I	CCNGG	1 cut(s)	1033
Bme18I	GGWCC	1 cut(s)	1027
BmgT120I	GGNCC	3 cut(s)	708, 709, 1027
BmiI	GGNNCC	4 cut(s)	661, 709, 710, 1029
BmrFI	CCNGG	1 cut(s)	1033
BmsI	GCATC	2 cut(s)	766, 1120
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	908
Bsa29I	ATCGAT	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	970
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	2 cut(s)	1141, 1171
Bsc4I	CCNNNNNNNGG	2 cut(s)	770, 1239
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	712, 903
BseBI	CCWGG	1 cut(s)	1033
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	1031
BseGI	GGATG	3 cut(s)	65, 675, 757
BseLI	CCNNNNNNNGG	2 cut(s)	770, 1239
BseMI	GCAATG	2 cut(s)	712, 903
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	2 cut(s)	712, 733
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	2 cut(s)	193, 710
BshNI	GGYRCC	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	354
BslFI	GGGAC	2 cut(s)	870, 1013
BslI	CCNNNNNNNGG	2 cut(s)	770, 1239
BsmAI	GTCTC	3 cut(s)	258, 334, 568
BsmFI	GGGAC	2 cut(s)	870, 1013
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	193, 710
Bso31I	GGTCTC	1 cut(s)	334
Bsp120I	GGGCCC	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	712, 733
Bsp143I	GATC	5 cut(s)	106, 340, 370, 682, 847
BspACI	CCGC	4 cut(s)	102, 187, 190, 908
BspANI	GGCC	2 cut(s)	193, 710
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	354
BspLI	GGNNCC	4 cut(s)	661, 709, 710, 1029
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	101, 855
BspT107I	GGYRCC	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	712, 903
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	1031
BssMI	GATC	5 cut(s)	106, 340, 370, 682, 847
BssNI	GRCGYC	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	1033
Bst6I	CTCTTC	2 cut(s)	151, 994
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	970
BstC8I	GCNNGC	4 cut(s)	171, 261, 945, 1052
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	65, 675, 757
BstKTI	GATC	5 cut(s)	109, 343, 373, 685, 850
BstMAI	GTCTC	3 cut(s)	258, 334, 568
BstMBI	GATC	5 cut(s)	106, 340, 370, 682, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 707, 973
BstNI	CCWGG	1 cut(s)	1033
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	1031
BstSLI	GKGCMC	2 cut(s)	712, 733
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	106, 682
BstYI	RGATCY	2 cut(s)	106, 682
Bsu15I	ATCGAT	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	2 cut(s)	193, 710
BsuTUI	ATCGAT	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	65, 675, 757
Cac8I	GCNNGC	4 cut(s)	171, 261, 945, 1052
Cfr13I	GGNCC	3 cut(s)	708, 709, 1027
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	2 cut(s)	401, 713
Csp6I	GTAC	3 cut(s)	603, 660, 1149
CviAII	CATG	7 cut(s)	30, 170, 210, 578, 664, 809, 948
CviQI	GTAC	3 cut(s)	603, 660, 1149
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	5 cut(s)	108, 342, 372, 684, 849
DpnII	GATC	5 cut(s)	106, 340, 370, 682, 847
Eam1104I	CTCTTC	2 cut(s)	151, 994
EarI	CTCTTC	2 cut(s)	151, 994
Eco24I	GRGCYC	1 cut(s)	712
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	1027
Eco57I	CTGAAG	2 cut(s)	96, 186
Eco72I	CACGTG	1 cut(s)	970
EcoO109I	RGGNCCY	1 cut(s)	708
EcoRII	CCWGG	1 cut(s)	1031
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	712
FaeI	CATG	7 cut(s)	33, 173, 213, 581, 667, 812, 951
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	2 cut(s)	870, 1013
FatI	CATG	7 cut(s)	29, 169, 209, 577, 663, 808, 947
FauNDI	CATATG	1 cut(s)	852
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	102, 188, 191, 402, 909
FokI	GGATG	3 cut(s)	52, 662, 744
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	5 cut(s)	102, 188, 191, 402, 909
FspBI	CTAG	6 cut(s)	260, 561, 642, 735, 897, 977
GluI	GCNGC	5 cut(s)	102, 188, 191, 402, 909
HaeIII	GGCC	2 cut(s)	193, 710
HgaI	GACGC	2 cut(s)	401, 713
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	7 cut(s)	33, 173, 213, 581, 667, 812, 951
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	356, 362, 892, 986
HpaI	GTTAAC	1 cut(s)	159
HphI	GGTGA	3 cut(s)	164, 760, 928
Hpy166II	GTNNAC	4 cut(s)	159, 470, 500, 985
Hpy188I	TCNGA	4 cut(s)	295, 361, 793, 1212
Hpy188III	TCNNGA	6 cut(s)	368, 887, 956, 1001, 1069, 1109
Hpy8I	GTNNAC	4 cut(s)	159, 470, 500, 985
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	7 cut(s)	120, 204, 210, 262, 306, 580, 1106
HpyCH4IV	ACGT	2 cut(s)	859, 969
HpyCH4V	TGCA	4 cut(s)	164, 404, 667, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 707, 973
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	859, 969
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	7 cut(s)	33, 173, 213, 581, 667, 812, 951
KpnI	GGTACC	1 cut(s)	663
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	106, 340, 370, 682, 847
LmnI	GCTCC	3 cut(s)	797, 869, 1162
LpnPI	CCDG	8 cut(s)	64, 135, 642, 929, 986, 1018, 1036, 1045
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	766, 1120
MaeI	CTAG	6 cut(s)	260, 561, 642, 735, 897, 977
MaeII	ACGT	2 cut(s)	859, 969
MaeIII	GTNAC	3 cut(s)	74, 1214, 1242
MalI	GATC	5 cut(s)	108, 342, 372, 684, 849
MboI	GATC	5 cut(s)	106, 340, 370, 682, 847
MboII	GAAGA	4 cut(s)	131, 138, 504, 981
MfeI	CAATTG	4 cut(s)	96, 936, 1057, 1220
MflI	RGATCY	2 cut(s)	106, 682
MhlI	GDGCHC	2 cut(s)	712, 733
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	1 cut(s)	802
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	8 cut(s)	158, 275, 384, 507, 780, 786, 930, 1011
MslI	CAYNNNNRTG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	1033
MunI	CAATTG	4 cut(s)	96, 936, 1057, 1220
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	3 cut(s)	170, 707, 973
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	5 cut(s)	106, 340, 370, 682, 847
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	7 cut(s)	33, 173, 213, 581, 667, 812, 951
NlaIV	GGNNCC	4 cut(s)	661, 709, 710, 1029
NmuCI	GTSAC	2 cut(s)	74, 1214
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	356, 362, 892
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	5 cut(s)	103, 189, 192, 403, 910
PleI	GAGTC	1 cut(s)	980
PmaCI	CACGTG	1 cut(s)	970
PmlI	CACGTG	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	980
Ppu21I	YACGTR	1 cut(s)	970
PshBI	ATTAAT	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	1031
PspCI	CACGTG	1 cut(s)	970
PspGI	CCWGG	1 cut(s)	1031
PspN4I	GGNNCC	4 cut(s)	661, 709, 710, 1029
PspOMI	GGGCCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	708, 709, 1027
PsuI	RGATCY	2 cut(s)	106, 682
RsaI	GTAC	3 cut(s)	604, 661, 1150
RsaNI	GTAC	3 cut(s)	603, 660, 1149
RseI	CAYNNNNRTG	1 cut(s)	70
SaqAI	TTAA	8 cut(s)	158, 275, 384, 507, 780, 786, 930, 1011
SatI	GCNGC	5 cut(s)	102, 188, 191, 402, 909
Sau3AI	GATC	5 cut(s)	106, 340, 370, 682, 847
Sau96I	GGNCC	3 cut(s)	708, 709, 1027
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	1 cut(s)	1033
SduI	GDGCHC	2 cut(s)	712, 733
SfaNI	GCATC	2 cut(s)	766, 1120
SinI	GGWCC	1 cut(s)	1027
SmiMI	CAYNNNNRTG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SphI	GCATGC	1 cut(s)	173
SsiI	CCGC	4 cut(s)	102, 187, 190, 908
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	6 cut(s)	260, 561, 642, 735, 897, 977
StyD4I	CCNGG	1 cut(s)	1031
TaiI	ACGT	2 cut(s)	862, 972
TaqI	TCGA	3 cut(s)	8, 247, 354
TauI	GCSGC	4 cut(s)	104, 190, 193, 911
TfiI	GAWTC	3 cut(s)	356, 362, 892
Tru1I	TTAA	8 cut(s)	158, 275, 384, 507, 780, 786, 930, 1011
Tru9I	TTAA	8 cut(s)	158, 275, 384, 507, 780, 786, 930, 1011
TseFI	GTSAC	2 cut(s)	74, 1214
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	74, 1214
TspDTI	ATGAA	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	1027
VspI	ATTAAT	1 cut(s)	786
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XspI	CTAG	6 cut(s)	260, 561, 642, 735, 897, 977
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.