AT1G62040

Autophagy protein Atg8 ubiquitin like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020835
Physical Location & Seq
Forward (+)
22932760 .. 22934549
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62040.2

Sequence Viewer

Length: 360 bp
ATGGCTAATAGCTCTTTCAAGTTGGAACACCCACTAGAGAGGAGACAAATTGAATCTTCTCGCATCAGGGAGAAGTATCCAGACAGAATTCCAGTGATCGTAGAGAGAGCTGAAAGAAGTGATGTTCCCAATATCGACAAGAAGAAGTACCTTGTTCCAGCTGATCTAACTGTTGGGCAATTTGTGTATGTTGTCCGTAAAAGAATCAAGCTGAGTGCCGAAAAGGCTATCTTCGTCTTTGTGAAGAACACATTGCCTCCAACTGCTGCAATGATGTCTGCAATCTATGATGAGAACAAAGACGAAGATGGGTTTCTCTACATGACTTACAGTGGAGAGAACACCTTTGGTTTGGTTTAA

Protein Analysis

119

Amino Acids

13.73

Weight (kDa)

8.83

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 14 - 90 3.9e-35 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62040
fragaria_vesca FvH4_3g22920
prunus_persica Prupe.4G215300_v2.0.a1
pyrus_communis pycom03g15090
rosa_laevigata RLG00000033967

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 87
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 19, 53
AluBI AGCT 4 cut(s) 12, 110, 161, 211
AluI AGCT 4 cut(s) 12, 110, 161, 211
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 87
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 302
BciVI GTATCC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 251, 276
BseMI GCAATG 2 cut(s) 251, 276
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 96, 163
BspCNI CTCAG 1 cut(s) 204
BsrDI GCAATG 2 cut(s) 251, 276
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 96, 163
Bst4CI ACNGT 2 cut(s) 172, 332
BstDEI CTNAG 1 cut(s) 212
BstKTI GATC 2 cut(s) 99, 166
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 96, 163
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 253
BsuI GTATCC 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 99, 337
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 5, 12, 110, 161, 211, 227
CviKI_1 RGCY 6 cut(s) 5, 12, 110, 161, 211, 227
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 212
DpnI GATC 2 cut(s) 98, 165
DpnII GATC 2 cut(s) 96, 163
EcoRI GAATTC 1 cut(s) 87
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 189, 288, 323
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 325
HinfI GANTC 2 cut(s) 53, 204
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 172, 332
HpyCH4V TGCA 2 cut(s) 269, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 2 cut(s) 96, 163
LpnPI CCDG 4 cut(s) 52, 93, 105, 171
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 35
MalI GATC 2 cut(s) 98, 165
MboI GATC 2 cut(s) 96, 163
MboII GAAGA 5 cut(s) 48, 154, 223, 256, 317
MluCI AATT 3 cut(s) 48, 87, 179
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 2 cut(s) 33, 267
MseI TTAA 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 96, 163
NlaIII CATG 1 cut(s) 325
PfeI GAWTC 2 cut(s) 53, 204
PkrI GCNGC 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 96, 163
SetI ASST 6 cut(s) 14, 112, 153, 163, 213, 347
SfaNI GCATC 1 cut(s) 72
Sse9I AATT 3 cut(s) 48, 87, 179
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 172, 332
TaqI TCGA 1 cut(s) 135
TasI AATT 3 cut(s) 48, 87, 179
TfiI GAWTC 2 cut(s) 53, 204
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 2 cut(s) 99, 337
TseI GCWGC 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 99, 337
XapI RAATTY 1 cut(s) 87
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.