AT1G62515

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0023841
Physical Location & Seq
Forward (+)
23136720 .. 23137413
694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62515.1

Sequence Viewer

Length: 456 bp
ATGTTAGCCTTGAGCGCAGTGCAAAGACAAGCTGCAGCCTCAAGATCAGCGAGTCCTTGGATGAGGGTGCAACATGGCTCGACCGGTGGCTTGCCAAGGGTTACGTTTAGTAGGCCGTTGAGTACGTTGGCGCAAACTCCTAGCTTAAGGGCGTCTCTAGGGCATTTGGCTATTGCCGGGCTAGGACTAGGGTGTGGTGTTGGCTTGGGTTTAGGGTTAGGTTTTGGCTTGGGAGAGGGGCTAGGTTTATGTTTTGGCTTGGGAGAAGGGCAACCGCAGTTACCGCAGGCGGATATTGTTGTGAAGAAAAGGAAGTTGAGGATCAAGAAAAGAGCTAAAGATTTTGTGGTTCTTGAAGCCATTGTTAATCTCACTTTTGGTTATAGAGGAGAGAGCATGTTAGTGCTGATTCTAGACTGGGTTCGAGAAGATTCTTCCAACAATTTATATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.01

Weight (kDa)

10.01

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023841)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62515 AT4G00163
pyrus_communis pycom133g00080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 275, 284, 290
AclWI GGATC 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 1 cut(s) 124
AflII CTTAAG 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 1 cut(s) 356
AluBI AGCT 3 cut(s) 32, 144, 335
AluI AGCT 3 cut(s) 32, 144, 335
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 32, 35
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 2 cut(s) 17, 133
AsuC2I CCSGG 1 cut(s) 178
BbvI GCAGC 2 cut(s) 19, 47
BceAI ACGGC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 6 cut(s) 141, 158, 182, 188, 242, 413
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 33, 36
BlsI GCNGC 2 cut(s) 34, 37
Bme1390I CCNGG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 25, 31
BpuMI CCSGG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 56, 95
BsaWI WCCGGW 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 56, 95
BseGI GGATG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 19, 47
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 84, 177
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 44, 321
BspACI CCGC 3 cut(s) 275, 284, 290
BspANI GGCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 329
BspTI CTTAAG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 56, 95
BssMI GATC 2 cut(s) 44, 321
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 2 cut(s) 56, 95
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 92, 288
BstF5I GGATG 1 cut(s) 66
BstHHI GCGC 2 cut(s) 17, 133
BstKTI GATC 2 cut(s) 47, 324
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 44, 321
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 14, 283
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 19, 47
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 92, 288
CfoI GCGC 2 cut(s) 17, 133
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 2 cut(s) 74, 397
CviQI GTAC 1 cut(s) 123
DpnI GATC 2 cut(s) 46, 323
DpnII GATC 2 cut(s) 44, 321
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 56, 95
EcoT14I CCWWGG 2 cut(s) 56, 95
ErhI CCWWGG 2 cut(s) 56, 95
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 2 cut(s) 77, 400
FaiI YATR 6 cut(s) 75, 250, 384, 398, 448, 450
FatI CATG 2 cut(s) 73, 396
Fnu4HI GCNGC 2 cut(s) 33, 36
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 33, 36
FspBI CTAG 6 cut(s) 141, 158, 182, 188, 242, 413
GlaI GCGC 2 cut(s) 16, 132
GluI GCNGC 2 cut(s) 33, 36
HaeIII GGCC 1 cut(s) 115
HapII CCGG 2 cut(s) 84, 177
HgaI GACGC 1 cut(s) 141
HhaI GCGC 2 cut(s) 17, 133
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 2 cut(s) 77, 400
Hin6I GCGC 2 cut(s) 15, 131
HinP1I GCGC 2 cut(s) 15, 131
HinfI GANTC 3 cut(s) 52, 409, 431
HpaII CCGG 2 cut(s) 84, 177
Hpy188III TCNNGA 5 cut(s) 42, 325, 353, 413, 425
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 2 cut(s) 104, 125
HpyCH4V TGCA 3 cut(s) 22, 35, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 283
HpySE526I ACGT 2 cut(s) 104, 125
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 77, 400
HspAI GCGC 2 cut(s) 15, 131
Kzo9I GATC 2 cut(s) 44, 321
LpnPI CCDG 4 cut(s) 97, 190, 272, 403
Lsp1109I GCAGC 2 cut(s) 19, 47
MaeI CTAG 6 cut(s) 141, 158, 182, 188, 242, 413
MaeII ACGT 2 cut(s) 104, 125
MaeIII GTNAC 2 cut(s) 100, 279
MalI GATC 2 cut(s) 46, 323
MboI GATC 2 cut(s) 44, 321
MboII GAAGA 3 cut(s) 316, 426, 440
MluCI AATT 1 cut(s) 442
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 49, 57, 229, 312, 380
MseI TTAA 3 cut(s) 146, 366, 454
MslI CAYNNNNRTG 1 cut(s) 401
MspCI CTTAAG 1 cut(s) 145
MspI CCGG 2 cut(s) 84, 177
MspR9I CCNGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 14, 283
NciI CCSGG 1 cut(s) 178
NdeII GATC 2 cut(s) 44, 321
NlaIII CATG 2 cut(s) 77, 400
NspI RCATGY 1 cut(s) 400
PfeI GAWTC 2 cut(s) 409, 431
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 2 cut(s) 34, 37
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 3 cut(s) 146, 366, 454
SatI GCNGC 2 cut(s) 33, 36
Sau3AI GATC 2 cut(s) 44, 321
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 178
SetI ASST 7 cut(s) 34, 107, 128, 146, 223, 247, 337
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 3 cut(s) 10, 40, 145
SmoI CTYRAG 3 cut(s) 10, 40, 145
Sse9I AATT 1 cut(s) 442
SsiI CCGC 3 cut(s) 275, 284, 290
SspMI CTAG 6 cut(s) 141, 158, 182, 188, 242, 413
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 2 cut(s) 56, 95
TaiI ACGT 2 cut(s) 107, 128
TaqI TCGA 2 cut(s) 80, 424
TasI AATT 1 cut(s) 442
TfiI GAWTC 2 cut(s) 409, 431
Tru1I TTAA 3 cut(s) 146, 366, 454
Tru9I TTAA 3 cut(s) 146, 366, 454
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 32, 35
TspRI CASTG 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 145
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 1 cut(s) 400
XspI CTAG 6 cut(s) 141, 158, 182, 188, 242, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.