pycom133g00080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000133
OG0023841
Physical Location & Seq
Reverse (-)
161395 .. 162342
948 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom133g00080.1

Sequence Viewer

Length: 711 bp
ATGTCACTAGATGGTCGTCATTGGACTTCTTTCAGGCATTTAGGATTGGCTCGTGGCATTTTTACAACTATCAGGCTTCAAGATGTAGTTGAACTTGTACATGAGATCTTTGGCCCTAACACCTACATACATCACAGTAGGGAAAAGAGAATCGAACTCCAAACCTCAAGTACAAAGATAATTGGCTACATCCATAACAAAGGAAACGATAAATTCCCACTTACAAACTCACCAATTACACAACATTTTCACACTGAATATATAACAAGTACGAAAGCACACTGGAAACCTTTGGGAACCTTATTTCCACAAACATTAAGAAGCAAGCTAAGAGAAACTGGAATGTTGAGGTTGATACCCAAAATGTTGGCTTTGATAGCAGTGCAAAGGCATACAGCAGCCTCAATGTCAGCAAGGCCTTGGATGAGAGAGCAGCAAGGTTCTACGGGAGGTTTGCCAACGCTGATGTTAAGTAACCCATTGAGGACATTAGCACAAACCCCTAATTTGAGGGTATCTCTAGGGCAGCTGGTGCCAGTGGAAGGGCTAGGTTTCGGTGTCGGCTTTGGCTTTGGCTTCGGCTTAGGGCCGGGGCATGTGCCACAAGAACTGACAAGGGCAAAGAAGAAGAGATTGAGTGCAAGGAAGAGAGCGAGTGAGGACGTCGTTTTGGATGCCATCTCTCAAACCCTAGAAGAACTGGGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.34

Weight (kDa)

10.51

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023841)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62515 AT4G00163
pyrus_communis pycom133g00080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 532
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 3 cut(s) 99, 172, 271
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 2 cut(s) 80, 92
AloI GAACNNNNNNTCC 2 cut(s) 289, 321
AluBI AGCT 2 cut(s) 328, 529
AluI AGCT 2 cut(s) 328, 529
AoxI GGCC 3 cut(s) 112, 416, 587
ApeKI GCWGC 3 cut(s) 398, 433, 526
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 113, 587
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 1 cut(s) 222
BanI GGYRCC 1 cut(s) 532
BauI CACGAG 1 cut(s) 51
BbvI GCAGC 3 cut(s) 410, 445, 538
BccI CCATC 2 cut(s) 5, 686
BcnI CCSGG 1 cut(s) 591
BfaI CTAG 4 cut(s) 8, 521, 548, 692
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 399, 434, 527
BlsI GCNGC 3 cut(s) 400, 435, 528
Bme1390I CCNGG 1 cut(s) 591
BmgT120I GGNCC 2 cut(s) 113, 587
BmiI GGNNCC 2 cut(s) 298, 534
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 664
BmuI ACTGGG 1 cut(s) 710
BplI GAGNNNNNCTC 2 cut(s) 502, 534
Bpu10I CCTNAGC 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 419, 590
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 4 cut(s) 287, 343, 536, 705
BseDI CCNNGG 2 cut(s) 419, 590
BseGI GGATG 3 cut(s) 189, 429, 679
BseLI CCNNNNNNNGG 1 cut(s) 542
BseNI ACTGG 4 cut(s) 287, 343, 536, 705
BseXI GCAGC 3 cut(s) 410, 445, 538
BshFI GGCC 3 cut(s) 114, 418, 589
BshNI GGYRCC 1 cut(s) 532
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 542
BsnI GGCC 3 cut(s) 114, 418, 589
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 1 cut(s) 105
BspANI GGCC 3 cut(s) 114, 418, 589
BspLI GGNNCC 2 cut(s) 298, 534
BspT107I GGYRCC 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 4 cut(s) 287, 343, 536, 705
BssECI CCNNGG 2 cut(s) 419, 590
BssMI GATC 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 663
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 623, 641
BstACI GRCGYC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 532
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 329, 583
BstF5I GGATG 3 cut(s) 189, 429, 679
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 377, 532
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 589
BstV1I GCAGC 3 cut(s) 410, 445, 538
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 3 cut(s) 114, 418, 589
BtsCI GGATG 3 cut(s) 189, 429, 679
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 4 cut(s) 252, 280, 387, 543
Cac8I GCNNGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 113, 587
Csp6I GTAC 3 cut(s) 98, 171, 270
CviAII CATG 2 cut(s) 101, 596
CviQI GTAC 3 cut(s) 98, 171, 270
DdeI CTNAG 2 cut(s) 329, 583
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 623, 641
EarI CTCTTC 2 cut(s) 623, 641
Eco130I CCWWGG 1 cut(s) 419
Eco147I AGGCCT 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 2 cut(s) 104, 599
FaiI YATR 7 cut(s) 102, 128, 195, 261, 263, 393, 597
FatI CATG 2 cut(s) 100, 595
Fnu4HI GCNGC 3 cut(s) 399, 434, 527
FokI GGATG 3 cut(s) 176, 436, 686
Fsp4HI GCNGC 3 cut(s) 399, 434, 527
FspBI CTAG 4 cut(s) 8, 521, 548, 692
GluI GCNGC 3 cut(s) 399, 434, 527
HaeIII GGCC 3 cut(s) 114, 418, 589
HapII CCGG 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 2 cut(s) 104, 599
HinfI GANTC 1 cut(s) 150
HpaII CCGG 1 cut(s) 590
HphI GGTGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 80
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 2 cut(s) 385, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 532
HpyF3I CTNAG 2 cut(s) 329, 583
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 2 cut(s) 104, 599
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 19, 58, 268, 324, 515, 549, 603, 686
Lsp1109I GCAGC 3 cut(s) 410, 445, 538
LweI GCATC 1 cut(s) 664
MaeI CTAG 4 cut(s) 8, 521, 548, 692
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 3, 473
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 4 cut(s) 637, 640, 658, 707
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 180, 212, 234, 505
MnlI CCTC 7 cut(s) 175, 342, 412, 443, 477, 504, 652
MseI TTAA 2 cut(s) 317, 470
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 377, 532
NciI CCSGG 1 cut(s) 591
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 104, 599
NlaIV GGNNCC 2 cut(s) 298, 534
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 599
PceI AGGCCT 1 cut(s) 418
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 400, 435, 528
PspN4I GGNNCC 2 cut(s) 298, 534
PspPI GGNCC 2 cut(s) 113, 587
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 3 cut(s) 99, 172, 271
RsaNI GTAC 3 cut(s) 98, 171, 270
SaqAI TTAA 2 cut(s) 317, 470
SatI GCNGC 3 cut(s) 399, 434, 527
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 113, 587
ScrFI CCNGG 1 cut(s) 591
SfaNI GCATC 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 180, 212, 234, 505
SseBI AGGCCT 1 cut(s) 418
SspMI CTAG 4 cut(s) 8, 521, 548, 692
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 666
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 180, 212, 234, 505
TatI WGTACW 2 cut(s) 97, 170
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 2 cut(s) 317, 470
Tru9I TTAA 2 cut(s) 317, 470
TscAI CASTG 4 cut(s) 259, 287, 387, 543
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 398, 433, 526
Tsp45I GTSAC 1 cut(s) 3
TspRI CASTG 4 cut(s) 259, 287, 387, 543
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 599
XspI CTAG 4 cut(s) 8, 521, 548, 692
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.