Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023830

Physical Location & Seq

Genomic Coordinates Reverse (-)

25405316 .. 25406418

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTTTGGCTTTCGATGAGTTTGGCCGGCCGTTCATTATACTAAGAGAGCAAGATCAAAAGACTCGTCTTAAGGGCATCGATGCTCAAAAGGCCAACATTTCCGCTGGTAAAGCAGTGGCTCGGATTCTCCGATCCTCTCTCGGTCCCAAGGGCATGGAAAAAAAATGCTTCAAGGACCTGACGGAGATGTCACCATATGTTAGTTTCTTCCTTTTGAATCTCATCTCTCTTAGGTCTATCCCTATGGCTCTTGCTTTGAACAGTGGATTGCAGCCCATTGAAACACTCTCAGCTGTAAAATCTCAGCAAATTAAGGAGAGGAGAACATTCCATTCTACGGGATTGATTGCAACGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005886 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0055044 GO:0061077 GO:0071944 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

10.08

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67760
rosa_samantha	Rh6CG065700 Rh6DG062800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	2 cut(s)	25, 29
AfiI	CCNNNNNNNGG	1 cut(s)	340
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	4 cut(s)	175, 220, 262, 284
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	3 cut(s)	25, 29, 93
ApeKI	GCWGC	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspS9I	GGNCC	2 cut(s)	146, 178
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	2 cut(s)	146, 178
BbvI	GCAGC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	146, 178
BmgT120I	GGNCC	2 cut(s)	146, 178
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	2 cut(s)	73, 87
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	306, 320
BseRI	GAGGAG	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	27, 31, 95
BshVI	ATCGAT	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	27, 31, 95
Bsp143I	GATC	2 cut(s)	55, 134
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	27, 31, 95
BspCNI	CTCAG	2 cut(s)	305, 319
BspDI	ATCGAT	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	55, 134
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	44, 233, 292, 306
BstKTI	GATC	2 cut(s)	58, 137
BstMBI	GATC	2 cut(s)	55, 134
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 113
BstV1I	GCAGC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	27, 31, 95
BsuTUI	ATCGAT	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 271
Cac8I	GCNNGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	146, 178
ClaI	ATCGAT	1 cut(s)	81
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	9 cut(s)	5, 11, 27, 31, 95, 122, 251, 277, 296
CviKI_1	RGCY	9 cut(s)	5, 11, 27, 31, 95, 122, 251, 277, 296
DdeI	CTNAG	4 cut(s)	44, 233, 292, 306
DpnI	GATC	2 cut(s)	57, 136
DpnII	GATC	2 cut(s)	55, 134
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	2 cut(s)	25, 29
EagI	CGGCCG	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	146, 178
Eco52I	CGGCCG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	160
FaiI	YATR	5 cut(s)	41, 158, 199, 201, 248
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	275
FseI	GGCCGGCC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	27, 31, 95
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	3 cut(s)	64, 127, 220
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	126, 134
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	274, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 113
HpyF3I	CTNAG	4 cut(s)	44, 233, 292, 306
Hsp92II	CATG	1 cut(s)	160
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	55, 134
LpnPI	CCDG	3 cut(s)	41, 93, 194
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	73, 87
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	2 cut(s)	57, 136
MboI	GATC	2 cut(s)	55, 134
MboII	GAAGA	1 cut(s)	202
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	148, 315
MroNI	GCCGGC	1 cut(s)	27
MseI	TTAA	2 cut(s)	72, 315
MspA1I	CMGCKG	2 cut(s)	107, 296
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	92, 113
NaeI	GCCGGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	55, 134
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	127, 220
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	146, 178
PspPPI	RGGWCCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	296
RigI	GGCCGGCC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	72, 315
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	55, 134
Sau96I	GGNCC	2 cut(s)	146, 178
SchI	GAGTC	1 cut(s)	58
SetI	ASST	3 cut(s)	183, 239, 298
SfaNI	GCATC	2 cut(s)	73, 87
SinI	GGWCC	2 cut(s)	146, 178
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	15, 81
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	127, 220
Tru1I	TTAA	2 cut(s)	72, 315
Tru9I	TTAA	2 cut(s)	72, 315
TscAI	CASTG	2 cut(s)	123, 271
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	123, 271
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	146, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.