Rh6DG062800
TCP Family

TCP-1/cpn60 chaperonin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0023830
Physical Location & Seq
Reverse (-)
6436202 .. 6437298
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG062800.1

Sequence Viewer

Length: 300 bp
ATGGCGCTGGCTTTCGATGAGTTCGGCCGGCCATCCATAATCCTAAGGGAGGAGGAGCAGAAGTCCCGATTGAGAGGCCTCGATGCTCAGAAGGCCAACATTGCCGCCGGCAAGGCCTACACCAAAATCCTCCGGACCTCGCTCGGACCTAAAGGCATGGATAAGATGCTCCAGAGCCCCGATGGCGAGGTCACCGTTGCAAATGATGGTTCCACGATCTTGGAGCAGAGGGATGTTGACAATCAAATTGCAAAGGGATATGAAATGACAATAAAATTCCATCACCCCATCAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cpn60_TCP1

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

6.73

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 42 - 85 2.2e-14 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67760
rosa_samantha Rh6CG065700 Rh6DG062800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 132
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 2 cut(s) 25, 29
AcsI RAATTY 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 132
AoxI GGCC 5 cut(s) 25, 29, 76, 93, 114
ApoI RAATTY 1 cut(s) 275
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 135, 146
AsuHPI GGTGA 2 cut(s) 184, 275
AvaII GGWCC 2 cut(s) 135, 146
AxyI CCTNAGG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 179
BccI CCATC 5 cut(s) 40, 176, 200, 288, 296
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 2 cut(s) 113, 183
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 135, 146
BmgT120I GGNCC 2 cut(s) 135, 146
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 2 cut(s) 73, 156
BpmI CTGGAG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 2 cut(s) 27, 107
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 132
BseGI GGATG 2 cut(s) 32, 238
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 101
BseRI GAGGAG 2 cut(s) 65, 68
BseX3I CGGCCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 27, 31, 78, 95, 116
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 28, 108, 133
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 5 cut(s) 27, 31, 78, 95, 116
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 1 cut(s) 105
BspANI GGCC 5 cut(s) 27, 31, 78, 95, 116
BspCNI CTCAG 1 cut(s) 100
BspEI TCCGGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 27, 107
BssAI RCCGGY 2 cut(s) 27, 107
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 9, 29, 109
BstDEI CTNAG 2 cut(s) 44, 87
BstEII GGTNACC 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 32, 238
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 92, 101, 113, 183
BstPI GGTNACC 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 5 cut(s) 27, 31, 78, 95, 116
BtsCI GGATG 2 cut(s) 32, 238
Cac8I GCNNGC 3 cut(s) 9, 29, 109
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 27, 107
Cfr13I GGNCC 2 cut(s) 135, 146
CviAII CATG 1 cut(s) 157
CviJI RGCY 7 cut(s) 11, 27, 31, 78, 95, 116, 177
CviKI_1 RGCY 7 cut(s) 11, 27, 31, 78, 95, 116, 177
DdeI CTNAG 2 cut(s) 44, 87
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 25, 29
EagI CGGCCG 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 25
Eco147I AGGCCT 2 cut(s) 78, 116
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 135, 146
Eco52I CGGCCG 1 cut(s) 25
Eco81I CCTNAGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoO65I GGTNACC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 38, 158, 261
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 19, 245
FriOI GRGCYC 1 cut(s) 179
FseI GGCCGGCC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 27, 31, 78, 95, 116
HapII CCGG 3 cut(s) 28, 108, 133
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 3 cut(s) 28, 108, 133
HphI GGTGA 2 cut(s) 184, 275
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 90, 146
Hpy188III TCNNGA 3 cut(s) 66, 133, 172
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 200, 251
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 101, 113, 183
HpyF3I CTNAG 2 cut(s) 44, 87
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 132
KroI GCCGGC 2 cut(s) 27, 107
KroNI GCCGGC 2 cut(s) 29, 109
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 55, 174, 223
LpnPI CCDG 4 cut(s) 41, 121, 146, 185
LweI GCATC 2 cut(s) 73, 156
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 2 cut(s) 246, 275
MnlI CCTC 8 cut(s) 43, 46, 68, 89, 140, 148, 181, 222
MroI TCCGGA 1 cut(s) 132
MroNI GCCGGC 2 cut(s) 27, 107
MspI CCGG 3 cut(s) 28, 108, 133
MwoI GCNNNNNNNGC 4 cut(s) 92, 101, 113, 183
NaeI GCCGGC 2 cut(s) 29, 109
NdeII GATC 1 cut(s) 216
NgoMIV GCCGGC 2 cut(s) 27, 107
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 190
PceI AGGCCT 2 cut(s) 78, 116
PdiI GCCGGC 2 cut(s) 29, 109
PkrI GCNGC 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 135, 146
RigI GGCCGGCC 1 cut(s) 31
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 216
Sau96I GGNCC 2 cut(s) 135, 146
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 140, 151, 192
SfaNI GCATC 2 cut(s) 73, 156
SinI GGWCC 2 cut(s) 135, 146
Sse9I AATT 2 cut(s) 246, 275
SseBI AGGCCT 2 cut(s) 78, 116
SsiI CCGC 1 cut(s) 105
StuI AGGCCT 2 cut(s) 78, 116
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 15, 81
TasI AATT 2 cut(s) 246, 275
TauI GCSGC 1 cut(s) 107
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 135, 146
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.